Hb_002133_020

Information

Type -
Description -
Location Contig2133: 33069-36439
Sequence    

Annotation

kegg
ID rcu:RCOM_0772420
description hypothetical protein
nr
ID XP_002533555.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5N6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0772420 PE=4 SV=1
Gene Ontology
ID GO:0005802
description protein yipf6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002133_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001747_030 0.0879107614 - - hypothetical protein F383_08210 [Gossypium arboreum]
3 Hb_000384_070 0.091512151 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000258_240 0.0994492752 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_000359_090 0.1070800724 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
6 Hb_019181_030 0.1097548839 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
7 Hb_002781_030 0.1129117977 - - protein binding protein, putative [Ricinus communis]
8 Hb_007926_050 0.1145616492 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
9 Hb_000300_630 0.1148903781 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
10 Hb_000023_290 0.116184277 - - steroid binding protein, putative [Ricinus communis]
11 Hb_002042_150 0.1200477708 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
12 Hb_000836_280 0.1202477488 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
13 Hb_001699_100 0.1213175805 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
14 Hb_004176_070 0.1236950333 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
15 Hb_003929_270 0.1250985165 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_000953_130 0.1270407668 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
17 Hb_086085_020 0.1279088462 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
18 Hb_003529_030 0.1282886202 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
19 Hb_000136_100 0.1309314341 - - PREDICTED: syntaxin-61 [Jatropha curcas]
20 Hb_000172_510 0.1312604783 - - hypothetical protein B456_007G243100 [Gossypium raimondii]

Gene co-expression network

sample Hb_002133_020 Hb_002133_020 Hb_001747_030 Hb_001747_030 Hb_002133_020--Hb_001747_030 Hb_000384_070 Hb_000384_070 Hb_002133_020--Hb_000384_070 Hb_000258_240 Hb_000258_240 Hb_002133_020--Hb_000258_240 Hb_000359_090 Hb_000359_090 Hb_002133_020--Hb_000359_090 Hb_019181_030 Hb_019181_030 Hb_002133_020--Hb_019181_030 Hb_002781_030 Hb_002781_030 Hb_002133_020--Hb_002781_030 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000359_090--Hb_000258_240 Hb_000359_090--Hb_002781_030 Hb_000359_090--Hb_000384_070 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_002781_030--Hb_000928_190 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11902 1.95701 2.07188 8.65814 2.04736 2.97465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79427 3.8732 2.55394 2.6652 1.64021

CAGE analysis