Hb_002133_030

Information

Type -
Description -
Location Contig2133: 43397-49226
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05790g
description POPTRDRAFT_780335; diphthamide synthesis DPH2 family protein
nr
ID XP_012074066.1
description PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
swissprot
ID Q4X0S7
description Diphthamide biosynthesis protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dph1 PE=3 SV=1
trembl
ID A0A067KJJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08675 PE=4 SV=1
Gene Ontology
ID GO:0017183
description diphthamide biosynthesis protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002133_030 0.0 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
2 Hb_023020_060 0.0534077011 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
3 Hb_001498_030 0.067362769 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
4 Hb_003125_060 0.0706310406 - - PREDICTED: snurportin-1 [Jatropha curcas]
5 Hb_004724_360 0.0713824946 - - OTU-like cysteine protease family protein [Populus trichocarpa]
6 Hb_000327_310 0.0754364745 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_000343_210 0.0760572884 - - ran-binding protein, putative [Ricinus communis]
8 Hb_006829_090 0.0763195949 - - PREDICTED: protein MOS2 [Jatropha curcas]
9 Hb_006002_030 0.077420856 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
10 Hb_073171_080 0.0781141929 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
11 Hb_001975_020 0.0787149082 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
12 Hb_000116_280 0.079613117 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_001474_030 0.0808157975 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
14 Hb_001396_290 0.0824837079 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
15 Hb_005295_040 0.083008617 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
16 Hb_000640_020 0.0850455526 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_000152_890 0.0854872376 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
18 Hb_000120_510 0.0863759891 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
19 Hb_000685_080 0.0867941493 - - protein binding protein, putative [Ricinus communis]
20 Hb_003018_160 0.087699427 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]

Gene co-expression network

sample Hb_002133_030 Hb_002133_030 Hb_023020_060 Hb_023020_060 Hb_002133_030--Hb_023020_060 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_003125_060 Hb_003125_060 Hb_002133_030--Hb_003125_060 Hb_004724_360 Hb_004724_360 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_000343_210 Hb_000343_210 Hb_002133_030--Hb_000343_210 Hb_000640_020 Hb_000640_020 Hb_023020_060--Hb_000640_020 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_003020_110 Hb_003020_110 Hb_023020_060--Hb_003020_110 Hb_000504_160 Hb_000504_160 Hb_023020_060--Hb_000504_160 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001969_040 Hb_001969_040 Hb_001498_030--Hb_001969_040 Hb_005725_070 Hb_005725_070 Hb_001498_030--Hb_005725_070 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070 Hb_000685_080 Hb_000685_080 Hb_003125_060--Hb_000685_080 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_001975_020 Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_000343_210--Hb_003020_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6114 8.87136 3.1493 3.36347 16.8923 15.8904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23031 4.7571 4.86101 4.62132 1.95158

CAGE analysis