Hb_002135_040

Information

Type -
Description -
Location Contig2135: 5669-7973
Sequence    

Annotation

kegg
ID pda:103715854
description uncharacterized LOC103715854
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID Q9WJR5
description Endogenous retrovirus group K member 19 Pol protein OS=Homo sapiens GN=ERVK-19 PE=2 SV=2
trembl
ID A0A061DPU8
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003298 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002135_040 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_002796_030 0.2206422938 - - -
3 Hb_018247_010 0.2729819699 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
4 Hb_004098_030 0.2982699651 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_126838_020 0.3009772708 - - JHL22C18.7 [Jatropha curcas]
6 Hb_070820_010 0.3077794946 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
7 Hb_011525_020 0.3108503171 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
8 Hb_003012_080 0.3205145829 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_007792_010 0.3222648308 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
10 Hb_000500_290 0.333866685 - - bromodomain-containing protein, putative [Ricinus communis]
11 Hb_012518_060 0.3341999901 - - -
12 Hb_001252_170 0.3433223728 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
13 Hb_003376_170 0.3444867954 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
14 Hb_000009_640 0.3452729411 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
15 Hb_048110_010 0.3484231612 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
16 Hb_001811_060 0.3518508264 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
17 Hb_003507_040 0.3527330552 - - hypothetical protein RCOM_1685970 [Ricinus communis]
18 Hb_001427_180 0.3552489514 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
19 Hb_000565_020 0.3569173222 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
20 Hb_000612_070 0.356943131 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002135_040 Hb_002135_040 Hb_002796_030 Hb_002796_030 Hb_002135_040--Hb_002796_030 Hb_018247_010 Hb_018247_010 Hb_002135_040--Hb_018247_010 Hb_004098_030 Hb_004098_030 Hb_002135_040--Hb_004098_030 Hb_126838_020 Hb_126838_020 Hb_002135_040--Hb_126838_020 Hb_070820_010 Hb_070820_010 Hb_002135_040--Hb_070820_010 Hb_011525_020 Hb_011525_020 Hb_002135_040--Hb_011525_020 Hb_002796_030--Hb_011525_020 Hb_002796_030--Hb_126838_020 Hb_003360_020 Hb_003360_020 Hb_002796_030--Hb_003360_020 Hb_003012_080 Hb_003012_080 Hb_002796_030--Hb_003012_080 Hb_003376_170 Hb_003376_170 Hb_002796_030--Hb_003376_170 Hb_000932_080 Hb_000932_080 Hb_018247_010--Hb_000932_080 Hb_042404_010 Hb_042404_010 Hb_018247_010--Hb_042404_010 Hb_000173_480 Hb_000173_480 Hb_018247_010--Hb_000173_480 Hb_018247_010--Hb_070820_010 Hb_004204_090 Hb_004204_090 Hb_018247_010--Hb_004204_090 Hb_009355_030 Hb_009355_030 Hb_018247_010--Hb_009355_030 Hb_004098_030--Hb_070820_010 Hb_002821_010 Hb_002821_010 Hb_004098_030--Hb_002821_010 Hb_162999_010 Hb_162999_010 Hb_004098_030--Hb_162999_010 Hb_086859_010 Hb_086859_010 Hb_004098_030--Hb_086859_010 Hb_001488_110 Hb_001488_110 Hb_004098_030--Hb_001488_110 Hb_004098_030--Hb_042404_010 Hb_000707_070 Hb_000707_070 Hb_126838_020--Hb_000707_070 Hb_003859_010 Hb_003859_010 Hb_126838_020--Hb_003859_010 Hb_126838_020--Hb_011525_020 Hb_126838_020--Hb_003360_020 Hb_000213_060 Hb_000213_060 Hb_126838_020--Hb_000213_060 Hb_000086_330 Hb_000086_330 Hb_070820_010--Hb_000086_330 Hb_070820_010--Hb_002821_010 Hb_070820_010--Hb_042404_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010 Hb_011525_020--Hb_003376_170 Hb_005217_020 Hb_005217_020 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_000441_230 Hb_000441_230 Hb_011525_020--Hb_000441_230 Hb_011525_020--Hb_003360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00930938 0.00767997 0 0 0.00932161 0.0266848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021149 0 0 0 0

CAGE analysis