Hb_002138_010

Information

Type -
Description -
Location Contig2138: 21247-30242
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30620g
description POPTRDRAFT_1069654; hypothetical protein
nr
ID XP_002298754.2
description hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID B9GHT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30620g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22090: 24241-24505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002138_010 0.0 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
2 Hb_002374_400 0.1067040029 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
3 Hb_000003_270 0.1295795753 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
4 Hb_001832_120 0.1377154394 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
5 Hb_000742_110 0.1423301965 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
6 Hb_007181_070 0.1430085549 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
7 Hb_003209_200 0.144025735 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
8 Hb_000907_170 0.1460214914 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_003097_210 0.1487194811 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
10 Hb_029243_040 0.1487246168 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
11 Hb_032260_030 0.1492093447 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
12 Hb_001016_090 0.1493220437 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
13 Hb_000599_350 0.1515713267 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
14 Hb_145084_010 0.1534691155 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
15 Hb_010560_040 0.1557622953 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
16 Hb_000363_200 0.1563102199 - - 40S ribosomal protein S8, putative [Ricinus communis]
17 Hb_012114_040 0.158898789 - - DNA binding protein, putative [Ricinus communis]
18 Hb_003052_220 0.1605555989 - - -
19 Hb_004931_100 0.1637281658 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
20 Hb_002374_390 0.1638525858 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]

Gene co-expression network

sample Hb_002138_010 Hb_002138_010 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_003185_050 Hb_003185_050 Hb_002374_400--Hb_003185_050 Hb_005000_180 Hb_005000_180 Hb_002374_400--Hb_005000_180 Hb_002374_390 Hb_002374_390 Hb_002374_400--Hb_002374_390 Hb_001005_080 Hb_001005_080 Hb_002374_400--Hb_001005_080 Hb_001016_090 Hb_001016_090 Hb_002374_400--Hb_001016_090 Hb_000003_270--Hb_003209_200 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_012291_030 Hb_012291_030 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000196_080 Hb_000196_080 Hb_000003_270--Hb_000196_080 Hb_001832_120--Hb_001016_090 Hb_010827_020 Hb_010827_020 Hb_001832_120--Hb_010827_020 Hb_001863_090 Hb_001863_090 Hb_001832_120--Hb_001863_090 Hb_032260_030 Hb_032260_030 Hb_001832_120--Hb_032260_030 Hb_148930_010 Hb_148930_010 Hb_001832_120--Hb_148930_010 Hb_001700_020 Hb_001700_020 Hb_001832_120--Hb_001700_020 Hb_010560_040 Hb_010560_040 Hb_000742_110--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_093458_050 Hb_093458_050 Hb_007181_070--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_007181_070--Hb_011953_020 Hb_000599_350 Hb_000599_350 Hb_007181_070--Hb_000599_350 Hb_000363_200 Hb_000363_200 Hb_007181_070--Hb_000363_200 Hb_005614_050 Hb_005614_050 Hb_007181_070--Hb_005614_050 Hb_007181_070--Hb_010560_040 Hb_003209_200--Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_003209_200--Hb_000424_210 Hb_010174_060 Hb_010174_060 Hb_003209_200--Hb_010174_060 Hb_003209_200--Hb_012291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.941464 1.09841 0.236424 0.740745 0.898356 0.737904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5399 4.25074 3.86876 3.16373 0.184858

CAGE analysis