Hb_002139_010

Information

Type -
Description -
Location Contig2139: 3196-13642
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002139_010 0.0 - - -
2 Hb_011639_060 0.1719748477 - - Oligopeptide transporter, putative [Ricinus communis]
3 Hb_011063_020 0.2834934156 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
4 Hb_000392_390 0.2842145531 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000160_030 0.2915667563 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
6 Hb_046440_010 0.2920110191 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
7 Hb_003752_050 0.2960232617 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
8 Hb_002028_100 0.2969177176 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
9 Hb_001369_380 0.3114159182 - - F-box family protein, putative [Theobroma cacao]
10 Hb_170193_010 0.3130003465 - - JHL25H03.10 [Jatropha curcas]
11 Hb_012363_010 0.3158890496 - - -
12 Hb_019654_080 0.3183009992 - - -
13 Hb_129067_010 0.3192732509 - - Cytochrome P450 superfamily protein [Theobroma cacao]
14 Hb_143397_010 0.3212266145 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
15 Hb_003688_170 0.3234322216 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
16 Hb_011639_070 0.3263551074 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
17 Hb_003540_130 0.3322784243 - - -
18 Hb_005723_040 0.3332561951 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
19 Hb_027028_030 0.3362060489 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000943_030 0.3391458225 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002139_010 Hb_002139_010 Hb_011639_060 Hb_011639_060 Hb_002139_010--Hb_011639_060 Hb_011063_020 Hb_011063_020 Hb_002139_010--Hb_011063_020 Hb_000392_390 Hb_000392_390 Hb_002139_010--Hb_000392_390 Hb_000160_030 Hb_000160_030 Hb_002139_010--Hb_000160_030 Hb_046440_010 Hb_046440_010 Hb_002139_010--Hb_046440_010 Hb_003752_050 Hb_003752_050 Hb_002139_010--Hb_003752_050 Hb_001369_380 Hb_001369_380 Hb_011639_060--Hb_001369_380 Hb_011639_060--Hb_000160_030 Hb_095471_010 Hb_095471_010 Hb_011639_060--Hb_095471_010 Hb_000943_030 Hb_000943_030 Hb_011639_060--Hb_000943_030 Hb_002450_110 Hb_002450_110 Hb_011639_060--Hb_002450_110 Hb_003688_170 Hb_003688_170 Hb_011063_020--Hb_003688_170 Hb_011063_020--Hb_000160_030 Hb_000590_030 Hb_000590_030 Hb_011063_020--Hb_000590_030 Hb_024404_010 Hb_024404_010 Hb_011063_020--Hb_024404_010 Hb_000251_090 Hb_000251_090 Hb_011063_020--Hb_000251_090 Hb_001903_080 Hb_001903_080 Hb_000392_390--Hb_001903_080 Hb_019654_080 Hb_019654_080 Hb_000392_390--Hb_019654_080 Hb_000392_390--Hb_003752_050 Hb_043674_060 Hb_043674_060 Hb_000392_390--Hb_043674_060 Hb_000392_390--Hb_000160_030 Hb_000160_030--Hb_003688_170 Hb_000160_030--Hb_000590_030 Hb_046440_010--Hb_000943_030 Hb_000415_060 Hb_000415_060 Hb_046440_010--Hb_000415_060 Hb_005723_040 Hb_005723_040 Hb_046440_010--Hb_005723_040 Hb_002243_040 Hb_002243_040 Hb_046440_010--Hb_002243_040 Hb_000326_030 Hb_000326_030 Hb_046440_010--Hb_000326_030 Hb_000397_100 Hb_000397_100 Hb_046440_010--Hb_000397_100 Hb_012363_010 Hb_012363_010 Hb_003752_050--Hb_012363_010 Hb_003752_050--Hb_019654_080 Hb_130788_010 Hb_130788_010 Hb_003752_050--Hb_130788_010 Hb_003752_050--Hb_046440_010 Hb_001195_390 Hb_001195_390 Hb_003752_050--Hb_001195_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.477818 0 0 0.0753524 0.142183 0.116396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.360168 0.082718 0

CAGE analysis