Hb_002141_040

Information

Type -
Description -
Location Contig2141: 37138-37756
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0046872
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002141_040 0.0 - - -
2 Hb_000109_030 0.1419194958 - - -
3 Hb_012180_040 0.1708140113 - - hypothetical protein VITISV_042517 [Vitis vinifera]
4 Hb_002205_050 0.1803098714 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
5 Hb_172970_010 0.1844485733 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
6 Hb_032631_040 0.190264124 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
7 Hb_009543_020 0.1911783889 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
8 Hb_005608_030 0.193506012 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
9 Hb_002551_070 0.1969873251 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
10 Hb_032458_010 0.1973262802 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
11 Hb_006663_070 0.1983868883 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
12 Hb_003916_010 0.2005045169 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
13 Hb_005228_130 0.2014932343 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_003623_030 0.2022992083 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
15 Hb_146109_010 0.2047892428 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004224_020 0.2049555972 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
17 Hb_007805_010 0.2065073322 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
18 Hb_002601_130 0.207381359 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
19 Hb_012180_030 0.2081099906 - - unnamed protein product [Vitis vinifera]
20 Hb_011918_040 0.2083435636 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002141_040 Hb_002141_040 Hb_000109_030 Hb_000109_030 Hb_002141_040--Hb_000109_030 Hb_012180_040 Hb_012180_040 Hb_002141_040--Hb_012180_040 Hb_002205_050 Hb_002205_050 Hb_002141_040--Hb_002205_050 Hb_172970_010 Hb_172970_010 Hb_002141_040--Hb_172970_010 Hb_032631_040 Hb_032631_040 Hb_002141_040--Hb_032631_040 Hb_009543_020 Hb_009543_020 Hb_002141_040--Hb_009543_020 Hb_000109_030--Hb_032631_040 Hb_002762_130 Hb_002762_130 Hb_000109_030--Hb_002762_130 Hb_000236_080 Hb_000236_080 Hb_000109_030--Hb_000236_080 Hb_003656_180 Hb_003656_180 Hb_000109_030--Hb_003656_180 Hb_009476_040 Hb_009476_040 Hb_000109_030--Hb_009476_040 Hb_006663_070 Hb_006663_070 Hb_012180_040--Hb_006663_070 Hb_002092_090 Hb_002092_090 Hb_012180_040--Hb_002092_090 Hb_000158_100 Hb_000158_100 Hb_012180_040--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_012180_040--Hb_000136_060 Hb_012180_030 Hb_012180_030 Hb_012180_040--Hb_012180_030 Hb_058702_010 Hb_058702_010 Hb_012180_040--Hb_058702_010 Hb_002849_040 Hb_002849_040 Hb_002205_050--Hb_002849_040 Hb_002205_050--Hb_009543_020 Hb_004060_030 Hb_004060_030 Hb_002205_050--Hb_004060_030 Hb_032458_010 Hb_032458_010 Hb_002205_050--Hb_032458_010 Hb_000696_350 Hb_000696_350 Hb_002205_050--Hb_000696_350 Hb_002205_050--Hb_006663_070 Hb_172970_010--Hb_012180_030 Hb_002419_030 Hb_002419_030 Hb_172970_010--Hb_002419_030 Hb_004448_090 Hb_004448_090 Hb_172970_010--Hb_004448_090 Hb_000959_090 Hb_000959_090 Hb_172970_010--Hb_000959_090 Hb_172970_010--Hb_012180_040 Hb_002551_070 Hb_002551_070 Hb_032631_040--Hb_002551_070 Hb_003623_030 Hb_003623_030 Hb_032631_040--Hb_003623_030 Hb_117552_010 Hb_117552_010 Hb_032631_040--Hb_117552_010 Hb_032631_040--Hb_009476_040 Hb_002974_060 Hb_002974_060 Hb_032631_040--Hb_002974_060 Hb_005701_070 Hb_005701_070 Hb_032631_040--Hb_005701_070 Hb_002903_080 Hb_002903_080 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_000342_080 Hb_000342_080 Hb_009543_020--Hb_000342_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.679587 0.651096 0.148411 0.195186 0.265363 2.20458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 0.524873 0.274854 0.607153 0.90402

CAGE analysis