Hb_002142_010

Information

Type -
Description -
Location Contig2142: 66066-66377
Sequence    

Annotation

kegg
ID rcu:RCOM_1619230
description hypothetical protein
nr
ID XP_002512022.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8A0
description Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1
trembl
ID B9RE83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002142_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_151694_010 0.0581502071 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
3 Hb_007709_020 0.0719434675 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
4 Hb_028872_040 0.0719603362 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_044313_010 0.1077477339 - - conserved hypothetical protein [Ricinus communis]
6 Hb_138667_010 0.1182331268 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_000280_120 0.1326593338 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
8 Hb_032299_070 0.1474557877 - - -
9 Hb_000243_050 0.157620359 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_000959_370 0.1593721215 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_006475_020 0.1676491486 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
12 Hb_006013_030 0.1691643339 - - -
13 Hb_003938_100 0.1734463655 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002585_060 0.1750740552 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
15 Hb_011242_070 0.1778890077 - - beta-cyanoalanine synthase [Hevea brasiliensis]
16 Hb_004021_120 0.1824528382 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_038190_030 0.1922885515 - - -
18 Hb_168909_010 0.1966012853 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
19 Hb_002997_050 0.1978590592 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
20 Hb_010813_030 0.2012545012 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002142_010 Hb_002142_010 Hb_151694_010 Hb_151694_010 Hb_002142_010--Hb_151694_010 Hb_007709_020 Hb_007709_020 Hb_002142_010--Hb_007709_020 Hb_028872_040 Hb_028872_040 Hb_002142_010--Hb_028872_040 Hb_044313_010 Hb_044313_010 Hb_002142_010--Hb_044313_010 Hb_138667_010 Hb_138667_010 Hb_002142_010--Hb_138667_010 Hb_000280_120 Hb_000280_120 Hb_002142_010--Hb_000280_120 Hb_151694_010--Hb_007709_020 Hb_151694_010--Hb_028872_040 Hb_151694_010--Hb_044313_010 Hb_151694_010--Hb_138667_010 Hb_004021_120 Hb_004021_120 Hb_151694_010--Hb_004021_120 Hb_007709_020--Hb_028872_040 Hb_007709_020--Hb_138667_010 Hb_007709_020--Hb_000280_120 Hb_003938_100 Hb_003938_100 Hb_007709_020--Hb_003938_100 Hb_028872_040--Hb_138667_010 Hb_028872_040--Hb_000280_120 Hb_000243_050 Hb_000243_050 Hb_028872_040--Hb_000243_050 Hb_028872_040--Hb_003938_100 Hb_006475_020 Hb_006475_020 Hb_044313_010--Hb_006475_020 Hb_032299_070 Hb_032299_070 Hb_044313_010--Hb_032299_070 Hb_000959_370 Hb_000959_370 Hb_044313_010--Hb_000959_370 Hb_044313_010--Hb_028872_040 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_000243_050 Hb_138667_010--Hb_003938_100 Hb_168909_010 Hb_168909_010 Hb_138667_010--Hb_168909_010 Hb_000280_120--Hb_000243_050 Hb_000280_120--Hb_168909_010 Hb_000280_120--Hb_003938_100 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.585104 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.492827 0.422071

CAGE analysis