Hb_002149_020

Information

Type -
Description -
Location Contig2149: 15466-18404
Sequence    

Annotation

kegg
ID rcu:RCOM_1213180
description hypothetical protein
nr
ID XP_012089601.1
description PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01722 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22158: 15508-18320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002149_020 0.0 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
2 Hb_002609_110 0.0611575311 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
3 Hb_066182_010 0.0637015094 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_004440_090 0.0659432725 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
5 Hb_002391_300 0.0661281567 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
6 Hb_000300_060 0.0714218147 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
7 Hb_003005_020 0.0729409891 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
8 Hb_007218_080 0.0748792202 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
9 Hb_001006_170 0.0752261806 - - Endonuclease V, putative [Ricinus communis]
10 Hb_000103_180 0.0756888112 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
11 Hb_004724_200 0.0759709064 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
12 Hb_000943_070 0.0782567423 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
13 Hb_003097_150 0.0791557331 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
14 Hb_001252_080 0.0802963729 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
15 Hb_148912_010 0.080403891 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000363_500 0.0809382247 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
17 Hb_002506_020 0.0811273044 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
18 Hb_002081_130 0.0812880573 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_002811_360 0.0818250367 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_000032_570 0.0820170589 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]

Gene co-expression network

sample Hb_002149_020 Hb_002149_020 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_066182_010--Hb_000300_060 Hb_005276_210 Hb_005276_210 Hb_066182_010--Hb_005276_210 Hb_002081_130 Hb_002081_130 Hb_066182_010--Hb_002081_130 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_004440_090--Hb_003005_020 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_000300_060--Hb_005276_210 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_003005_020--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.2824 19.2796 19.4605 30.0475 78.1285 73.2818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.4963 55.5213 45.6372 32.5234 18.1582

CAGE analysis