Hb_002150_010

Information

Type -
Description -
Location Contig2150: 19657-23498
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10240g
description POPTRDRAFT_180099; hypothetical protein
nr
ID XP_002297990.2
description hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
swissprot
ID Q9LYS2
description ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2
trembl
ID B9GL97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10240g PE=3 SV=2
Gene Ontology
ID GO:0016021
description abc transporter c family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_010 0.0 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
2 Hb_002391_350 0.0913871994 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
3 Hb_000237_150 0.09139611 - - Epoxide hydrolase 2 [Morus notabilis]
4 Hb_000852_050 0.0914057941 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
5 Hb_032050_050 0.1075722893 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
6 Hb_001838_050 0.1081411738 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
7 Hb_088916_010 0.118174899 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
8 Hb_000238_060 0.1205193083 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_002110_270 0.1220871163 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
10 Hb_000649_030 0.1227258043 - - scab resistance family protein [Populus trichocarpa]
11 Hb_000381_030 0.1227332771 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
12 Hb_001405_100 0.1244622295 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
13 Hb_142332_010 0.1252847541 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_004884_200 0.125876745 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
15 Hb_111582_010 0.1268473509 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
16 Hb_005211_090 0.1279795099 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
17 Hb_009627_040 0.1305749936 - - Lipase class 3-related protein, putative [Theobroma cacao]
18 Hb_005237_040 0.1330700073 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
19 Hb_000487_240 0.1331512341 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
20 Hb_004574_010 0.1332844045 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_010 Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_002150_010--Hb_002391_350 Hb_000237_150 Hb_000237_150 Hb_002150_010--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_002150_010--Hb_000852_050 Hb_032050_050 Hb_032050_050 Hb_002150_010--Hb_032050_050 Hb_001838_050 Hb_001838_050 Hb_002150_010--Hb_001838_050 Hb_088916_010 Hb_088916_010 Hb_002150_010--Hb_088916_010 Hb_004884_200 Hb_004884_200 Hb_002391_350--Hb_004884_200 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_009627_040 Hb_009627_040 Hb_002391_350--Hb_009627_040 Hb_005237_040 Hb_005237_040 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_006711_020 Hb_006711_020 Hb_002391_350--Hb_006711_020 Hb_000238_060 Hb_000238_060 Hb_000237_150--Hb_000238_060 Hb_000237_150--Hb_000852_050 Hb_001405_100 Hb_001405_100 Hb_000237_150--Hb_001405_100 Hb_000616_050 Hb_000616_050 Hb_000237_150--Hb_000616_050 Hb_000649_030 Hb_000649_030 Hb_000237_150--Hb_000649_030 Hb_002671_110 Hb_002671_110 Hb_000237_150--Hb_002671_110 Hb_000852_050--Hb_000238_060 Hb_000852_050--Hb_002391_350 Hb_000852_050--Hb_001405_100 Hb_001638_110 Hb_001638_110 Hb_000852_050--Hb_001638_110 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_003031_030 Hb_003031_030 Hb_001838_050--Hb_003031_030 Hb_001838_050--Hb_000237_150 Hb_001838_050--Hb_088916_010 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_008140_060 Hb_008140_060 Hb_088916_010--Hb_008140_060 Hb_000740_130 Hb_000740_130 Hb_088916_010--Hb_000740_130 Hb_000920_360 Hb_000920_360 Hb_088916_010--Hb_000920_360 Hb_001105_200 Hb_001105_200 Hb_088916_010--Hb_001105_200 Hb_182021_010 Hb_182021_010 Hb_088916_010--Hb_182021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.290757 0.0669398 0.146184 0 0.0108581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.799397 0.0673139

CAGE analysis