Hb_002150_020

Information

Type -
Description -
Location Contig2150: 27277-33446
Sequence    

Annotation

kegg
ID cit:102612949
description translation initiation factor IF-2, mitochondrial-like
nr
ID XP_012086780.1
description PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID A4XL70
description Translation initiation factor IF-2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=infB PE=3 SV=1
trembl
ID A0A067JRA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20499 PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor if- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22220: 27243-32671 , PASA_asmbl_22221: 32694-33181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_020 0.0 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_004041_030 0.0480784771 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
3 Hb_005571_010 0.0634907189 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
4 Hb_055690_010 0.0647612424 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_001009_260 0.0725602575 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
6 Hb_032631_070 0.0748567827 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
7 Hb_005305_020 0.0753346983 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
8 Hb_030736_040 0.0850902165 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_000579_040 0.0865743369 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
10 Hb_004111_030 0.0873547503 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
11 Hb_002249_080 0.0907091596 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
12 Hb_130589_010 0.0926091526 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000120_860 0.0931885149 - - nucellin, putative [Ricinus communis]
14 Hb_000510_190 0.0945189052 - - glutathione reductase [Hevea brasiliensis]
15 Hb_008375_010 0.094971887 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_001677_220 0.0951385983 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
17 Hb_001117_110 0.0953114836 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_007441_310 0.0965618088 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
19 Hb_000585_110 0.0966139618 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
20 Hb_003355_010 0.0979928409 - - Heat shock 70 kDa protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_020 Hb_002150_020 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_005571_010 Hb_005571_010 Hb_002150_020--Hb_005571_010 Hb_055690_010 Hb_055690_010 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_004041_030--Hb_005305_020 Hb_001221_300 Hb_001221_300 Hb_004041_030--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_004041_030--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_004041_030--Hb_000025_500 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_005571_010--Hb_055690_010 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_032631_070--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_002075_030 Hb_002075_030 Hb_032631_070--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_032631_070--Hb_000585_110 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_004672_020 Hb_004672_020 Hb_005305_020--Hb_004672_020 Hb_001307_100 Hb_001307_100 Hb_005305_020--Hb_001307_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71087 7.92626 12.0847 14.4101 3.55948 3.83738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86899 5.03221 5.07633 10.0437 28.4565

CAGE analysis