Hb_002150_030

Information

Type -
Description -
Location Contig2150: 34531-41758
Sequence    

Annotation

kegg
ID rcu:RCOM_1691060
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_012086763.1
description PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
swissprot
ID Q9T014
description Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2
trembl
ID A0A067JMX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20487 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein spa1-related 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22222: 35834-38908 , PASA_asmbl_22223: 39060-42165 , PASA_asmbl_22224: 39386-42165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_030 0.0 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
2 Hb_007108_030 0.0607196302 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_007586_030 0.0643178568 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
4 Hb_000977_180 0.0647358033 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
5 Hb_001797_050 0.0678145842 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
6 Hb_006649_060 0.0689788395 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009411_010 0.0780040741 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
8 Hb_123777_030 0.0792385847 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
9 Hb_000815_210 0.0804398115 - - uncoupling protein 3, partial [Manihot esculenta]
10 Hb_005977_090 0.0805169655 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
11 Hb_001866_110 0.0809162111 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
12 Hb_001736_040 0.0815973533 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000101_240 0.0817874922 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_002477_030 0.0853118409 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
15 Hb_003406_040 0.0864184363 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_000723_260 0.0869206946 - - ethylene insensitive protein, putative [Ricinus communis]
17 Hb_000538_200 0.0871444291 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
18 Hb_000207_390 0.0879003307 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
19 Hb_000072_350 0.087949187 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
20 Hb_003506_080 0.0905459268 - - dipeptidyl peptidase IV, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_030 Hb_002150_030 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_007586_030 Hb_007586_030 Hb_002150_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_002150_030--Hb_000977_180 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_006649_060 Hb_006649_060 Hb_002150_030--Hb_006649_060 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_007108_030--Hb_009411_010 Hb_007108_030--Hb_001797_050 Hb_003428_070 Hb_003428_070 Hb_007108_030--Hb_003428_070 Hb_003506_080 Hb_003506_080 Hb_007108_030--Hb_003506_080 Hb_001866_110 Hb_001866_110 Hb_007108_030--Hb_001866_110 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_007586_030--Hb_000977_180 Hb_007586_030--Hb_006649_060 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_000977_180--Hb_123777_030 Hb_005214_160 Hb_005214_160 Hb_000977_180--Hb_005214_160 Hb_005977_090 Hb_005977_090 Hb_000977_180--Hb_005977_090 Hb_007364_010 Hb_007364_010 Hb_000977_180--Hb_007364_010 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_001541_020 Hb_001541_020 Hb_006649_060--Hb_001541_020 Hb_000031_050 Hb_000031_050 Hb_006649_060--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_006649_060--Hb_022408_010 Hb_183963_030 Hb_183963_030 Hb_006649_060--Hb_183963_030 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8206 11.1034 3.6949 5.14777 21.3079 21.9617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94261 8.87596 13.2279 7.86072 8.64798

CAGE analysis