Hb_002150_040

Information

Type -
Description -
Location Contig2150: 43506-49437
Sequence    

Annotation

kegg
ID tcc:TCM_005197
description Nucleotide-sugar transporter family protein
nr
ID XP_012086770.1
description PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
swissprot
ID Q8LGE9
description CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1
trembl
ID A0A067JRA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20489 PE=4 SV=1
Gene Ontology
ID GO:0000139
description nucleotide-sugar transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22226: 43595-49412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_040 0.0 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
2 Hb_000159_090 0.0876234591 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
3 Hb_000140_280 0.0899490558 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
4 Hb_005218_020 0.0930000416 - - Uncharacterized protein isoform 3 [Theobroma cacao]
5 Hb_000069_210 0.0948469998 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_086085_020 0.0965582761 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
7 Hb_000136_100 0.0998329502 - - PREDICTED: syntaxin-61 [Jatropha curcas]
8 Hb_000094_210 0.1000971603 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_008970_030 0.1001274507 - - arf gtpase-activating protein, putative [Ricinus communis]
10 Hb_003929_270 0.1008907704 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000735_110 0.1019432882 - - fk506-binding protein, putative [Ricinus communis]
12 Hb_003529_030 0.1025649184 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
13 Hb_099878_030 0.1030864087 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
14 Hb_000115_150 0.1031253536 - - PREDICTED: IST1 homolog [Jatropha curcas]
15 Hb_000258_240 0.1044208226 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_007481_010 0.105538851 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
17 Hb_000392_190 0.1060186218 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
18 Hb_000477_100 0.1062232842 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
19 Hb_000004_020 0.1062999321 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001842_010 0.1073070744 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_040 Hb_002150_040 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_005218_020 Hb_005218_020 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_000136_100 Hb_000136_100 Hb_002150_040--Hb_000136_100 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_000140_280--Hb_007638_030 Hb_000429_150 Hb_000429_150 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_001876_010 Hb_001876_010 Hb_000069_210--Hb_001876_010 Hb_007416_090 Hb_007416_090 Hb_000069_210--Hb_007416_090 Hb_000095_080 Hb_000095_080 Hb_000069_210--Hb_000095_080 Hb_001789_150 Hb_001789_150 Hb_000069_210--Hb_001789_150 Hb_001936_130 Hb_001936_130 Hb_000069_210--Hb_001936_130 Hb_000094_210 Hb_000094_210 Hb_000069_210--Hb_000094_210 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_003929_270 Hb_003929_270 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_007894_010 Hb_007894_010 Hb_000136_100--Hb_007894_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000258_240 Hb_000258_240 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6898 2.53202 4.21487 14.8917 4.47397 8.50157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02008 4.3986 7.09973 9.02365 6.81023

CAGE analysis