Hb_002150_060

Information

Type -
Description -
Location Contig2150: 52907-54269
Sequence    

Annotation

kegg
ID tcc:TCM_016399
description Arabinogalactan protein 22
nr
ID XP_012086771.1
description PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
swissprot
ID O82337
description Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1
trembl
ID A0A067JZA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1
Gene Ontology
ID GO:0006826
description arabinogalactan peptide 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22228: 52849-53795
cDNA
(Sanger)
(ID:Location)		 036_F23.ab1: 53027-53755 , 052_M12.ab1: 53027-53725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_060 0.0 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
2 Hb_000130_110 0.1533560667 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
3 Hb_003994_190 0.1701539299 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001545_100 0.1828393216 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
5 Hb_001096_110 0.1881094011 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
6 Hb_006153_080 0.1886624649 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
7 Hb_000712_050 0.1886645342 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
8 Hb_000340_310 0.188982134 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_005569_020 0.192174488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001195_360 0.1947952671 - - PREDICTED: random slug protein 5 [Jatropha curcas]
11 Hb_000215_080 0.195536369 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
12 Hb_005542_060 0.2011310444 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002043_050 0.2037824 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
14 Hb_005928_100 0.2053511068 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
15 Hb_002194_090 0.2059061433 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000127_110 0.2073556892 - - -
17 Hb_005489_100 0.2076761157 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000108_070 0.2089073683 - - alpha-tubulin 1 [Hevea brasiliensis]
19 Hb_006711_060 0.2096468705 - - Tubulin beta-1 chain [Morus notabilis]
20 Hb_002078_170 0.2104678214 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_002150_060 Hb_002150_060 Hb_000130_110 Hb_000130_110 Hb_002150_060--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_002150_060--Hb_003994_190 Hb_001545_100 Hb_001545_100 Hb_002150_060--Hb_001545_100 Hb_001096_110 Hb_001096_110 Hb_002150_060--Hb_001096_110 Hb_006153_080 Hb_006153_080 Hb_002150_060--Hb_006153_080 Hb_000712_050 Hb_000712_050 Hb_002150_060--Hb_000712_050 Hb_000130_110--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_003994_190--Hb_005928_100 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_003540_030 Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_001545_100--Hb_000140_050 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_001159_080 Hb_001159_080 Hb_001096_110--Hb_001159_080 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_003581_260 Hb_003581_260 Hb_001096_110--Hb_003581_260 Hb_010407_180 Hb_010407_180 Hb_001096_110--Hb_010407_180 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_006153_080--Hb_000340_310 Hb_001277_090 Hb_001277_090 Hb_006153_080--Hb_001277_090 Hb_006153_080--Hb_001096_110 Hb_006153_080--Hb_000130_110 Hb_005489_100 Hb_005489_100 Hb_000712_050--Hb_005489_100 Hb_000712_050--Hb_003994_190 Hb_000712_050--Hb_001195_360 Hb_002194_090 Hb_002194_090 Hb_000712_050--Hb_002194_090 Hb_000215_080 Hb_000215_080 Hb_000712_050--Hb_000215_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.5647 4.67908 64.6633 58.6057 10.752 17.7371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9941 69.3903 213.817 26.1673 17.6518

CAGE analysis