Hb_002150_110

Information

Type -
Description -
Location Contig2150: 93235-99699
Sequence    

Annotation

kegg
ID rcu:RCOM_1690730
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_012086777.1
description PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
swissprot
ID Q94F27
description Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1
trembl
ID A0A067JMY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20497 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_110 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
2 Hb_000347_270 0.1442267939 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
3 Hb_003638_010 0.1481560464 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
4 Hb_007479_070 0.1603072345 - - peroxisomal membrane protein [Hevea brasiliensis]
5 Hb_001105_050 0.1648173365 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
6 Hb_000085_140 0.1650352668 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
7 Hb_048141_030 0.1660827596 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
8 Hb_000136_030 0.1663366348 - - serine/arginine rich splicing factor, putative [Ricinus communis]
9 Hb_065525_130 0.1664662997 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_004324_330 0.1670798398 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
11 Hb_000538_260 0.1674422597 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
12 Hb_007305_020 0.1693329278 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
13 Hb_006569_040 0.1696799031 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
14 Hb_018202_050 0.1720059295 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
15 Hb_006570_010 0.1727155585 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001662_140 0.1735138713 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
17 Hb_003900_030 0.1737847875 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
18 Hb_002233_130 0.1762631636 - - transporter, putative [Ricinus communis]
19 Hb_000808_110 0.1787175007 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
20 Hb_007283_010 0.1797958575 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002150_110 Hb_002150_110 Hb_000347_270 Hb_000347_270 Hb_002150_110--Hb_000347_270 Hb_003638_010 Hb_003638_010 Hb_002150_110--Hb_003638_010 Hb_007479_070 Hb_007479_070 Hb_002150_110--Hb_007479_070 Hb_001105_050 Hb_001105_050 Hb_002150_110--Hb_001105_050 Hb_000085_140 Hb_000085_140 Hb_002150_110--Hb_000085_140 Hb_048141_030 Hb_048141_030 Hb_002150_110--Hb_048141_030 Hb_018202_050 Hb_018202_050 Hb_000347_270--Hb_018202_050 Hb_000270_160 Hb_000270_160 Hb_000347_270--Hb_000270_160 Hb_004701_050 Hb_004701_050 Hb_000347_270--Hb_004701_050 Hb_002092_110 Hb_002092_110 Hb_000347_270--Hb_002092_110 Hb_002681_170 Hb_002681_170 Hb_000347_270--Hb_002681_170 Hb_000384_080 Hb_000384_080 Hb_000347_270--Hb_000384_080 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_000024_120 Hb_000024_120 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160 Hb_010812_050 Hb_010812_050 Hb_007479_070--Hb_010812_050 Hb_000856_420 Hb_000856_420 Hb_007479_070--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_007479_070--Hb_025557_050 Hb_001123_260 Hb_001123_260 Hb_007479_070--Hb_001123_260 Hb_002686_240 Hb_002686_240 Hb_007479_070--Hb_002686_240 Hb_008059_010 Hb_008059_010 Hb_007479_070--Hb_008059_010 Hb_065525_130 Hb_065525_130 Hb_001105_050--Hb_065525_130 Hb_001105_050--Hb_000085_140 Hb_005288_080 Hb_005288_080 Hb_001105_050--Hb_005288_080 Hb_000436_100 Hb_000436_100 Hb_001105_050--Hb_000436_100 Hb_000042_340 Hb_000042_340 Hb_001105_050--Hb_000042_340 Hb_001105_050--Hb_003638_010 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_000085_140--Hb_065525_130 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_048141_030--Hb_065525_130 Hb_000175_590 Hb_000175_590 Hb_048141_030--Hb_000175_590 Hb_000015_100 Hb_000015_100 Hb_048141_030--Hb_000015_100 Hb_006570_010 Hb_006570_010 Hb_048141_030--Hb_006570_010 Hb_048141_030--Hb_000085_140 Hb_000948_170 Hb_000948_170 Hb_048141_030--Hb_000948_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32199 0.411309 0.545918 0.2527 0.56303 0.438185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147438 0.231924 0 0.139819 0.633716

CAGE analysis