Hb_002150_140

Information

Type -
Description -
Location Contig2150: 108989-115556
Sequence    

Annotation

kegg
ID cit:102620557
description uncharacterized LOC102620557
nr
ID XP_012086762.1
description PREDICTED: girdin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20485 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22242: 109293-115703 , PASA_asmbl_22243: 110016-115703
cDNA
(Sanger)
(ID:Location)		 016_H07.ab1: 113983-115703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_140 0.0 - - PREDICTED: girdin-like [Jatropha curcas]
2 Hb_000555_020 0.0768037056 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_114310_070 0.082420695 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
4 Hb_005496_050 0.0839339271 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
5 Hb_087313_010 0.0857097419 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001438_010 0.0883372011 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
7 Hb_021650_010 0.0917384343 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
8 Hb_002915_010 0.091863333 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
9 Hb_001660_120 0.0926442101 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
10 Hb_001014_100 0.0929036864 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
11 Hb_000108_050 0.0929741685 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
12 Hb_002631_240 0.0932785367 - - JHL17M24.3 [Jatropha curcas]
13 Hb_000445_140 0.0955837975 - - hypothetical protein RCOM_0561550 [Ricinus communis]
14 Hb_011861_050 0.0961507435 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
15 Hb_000802_130 0.097316263 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
16 Hb_005601_020 0.0977572461 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
17 Hb_160271_010 0.098357784 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
18 Hb_033312_010 0.0993447411 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_007741_110 0.1004733627 - - -
20 Hb_001703_040 0.101016919 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002150_140 Hb_002150_140 Hb_000555_020 Hb_000555_020 Hb_002150_140--Hb_000555_020 Hb_114310_070 Hb_114310_070 Hb_002150_140--Hb_114310_070 Hb_005496_050 Hb_005496_050 Hb_002150_140--Hb_005496_050 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_005235_070 Hb_005235_070 Hb_000555_020--Hb_005235_070 Hb_102948_010 Hb_102948_010 Hb_000555_020--Hb_102948_010 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120 Hb_033312_010 Hb_033312_010 Hb_114310_070--Hb_033312_010 Hb_000237_200 Hb_000237_200 Hb_114310_070--Hb_000237_200 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_002876_300 Hb_002876_300 Hb_114310_070--Hb_002876_300 Hb_001014_100 Hb_001014_100 Hb_005496_050--Hb_001014_100 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_000445_140 Hb_000445_140 Hb_005496_050--Hb_000445_140 Hb_001619_050 Hb_001619_050 Hb_005496_050--Hb_001619_050 Hb_012438_030 Hb_012438_030 Hb_087313_010--Hb_012438_030 Hb_002218_020 Hb_002218_020 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_001438_010--Hb_003053_110 Hb_001195_770 Hb_001195_770 Hb_001438_010--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_001438_010--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3202 7.58406 19.2565 10.9762 7.32955 6.86206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94241 7.29885 7.01358 5.68412 21.7055

CAGE analysis