Hb_002151_060

Information

Type -
Description -
Location Contig2151: 62314-70543
Sequence    

Annotation

kegg
ID rcu:RCOM_0712300
description DNA binding protein, putative
nr
ID XP_012077029.1
description PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_060 0.0 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
2 Hb_000806_130 0.1369469326 - - Adenosine kinase 2 [Theobroma cacao]
3 Hb_001148_100 0.1420537959 - - -
4 Hb_000696_070 0.1459925629 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
5 Hb_001486_350 0.1472178444 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_002781_050 0.1485546305 - - cytochrome B5 isoform 1, putative [Ricinus communis]
7 Hb_000236_190 0.1500154836 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
8 Hb_001014_190 0.1518559262 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
9 Hb_001119_070 0.1542645093 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
10 Hb_001148_090 0.1560275903 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
11 Hb_033152_070 0.1581796182 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
12 Hb_009674_010 0.1597328534 - - AAEL007687-PA [Aedes aegypti]
13 Hb_000679_040 0.1635460151 - - Cellulose synthase 1 [Theobroma cacao]
14 Hb_000003_310 0.1635502348 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
15 Hb_004330_080 0.1644314203 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
16 Hb_029510_100 0.1648370036 - - scab resistance family protein [Populus trichocarpa]
17 Hb_007537_030 0.1661887535 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
18 Hb_000394_050 0.1677623721 - - -
19 Hb_000152_710 0.168273045 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
20 Hb_166053_010 0.1691949156 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]

Gene co-expression network

sample Hb_002151_060 Hb_002151_060 Hb_000806_130 Hb_000806_130 Hb_002151_060--Hb_000806_130 Hb_001148_100 Hb_001148_100 Hb_002151_060--Hb_001148_100 Hb_000696_070 Hb_000696_070 Hb_002151_060--Hb_000696_070 Hb_001486_350 Hb_001486_350 Hb_002151_060--Hb_001486_350 Hb_002781_050 Hb_002781_050 Hb_002151_060--Hb_002781_050 Hb_000236_190 Hb_000236_190 Hb_002151_060--Hb_000236_190 Hb_000806_130--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000806_130--Hb_000696_070 Hb_000806_130--Hb_000236_190 Hb_001119_070 Hb_001119_070 Hb_000806_130--Hb_001119_070 Hb_000300_420 Hb_000300_420 Hb_000806_130--Hb_000300_420 Hb_001148_100--Hb_002781_050 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_090 Hb_001148_090 Hb_001148_100--Hb_001148_090 Hb_000696_070--Hb_002781_050 Hb_000696_070--Hb_001119_070 Hb_001369_630 Hb_001369_630 Hb_000696_070--Hb_001369_630 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_001486_350--Hb_000236_190 Hb_012707_010 Hb_012707_010 Hb_001486_350--Hb_012707_010 Hb_001486_350--Hb_002781_050 Hb_001486_350--Hb_000300_420 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_002781_050--Hb_001148_090 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000236_190--Hb_000300_420 Hb_000236_190--Hb_001119_070 Hb_000236_190--Hb_001329_180 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173757 0.250012 0.307195 1.94597 0.231607 0.0580394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167458 0.296376 0.183529 0.857882 0.680503

CAGE analysis