Hb_002151_080

Information

Type -
Description -
Location Contig2151: 78838-82057
Sequence    

Annotation

kegg
ID ath:AT2G06210
description ELF8; protein early flowering 8
nr
ID EYU28341.1
description hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
swissprot
ID B5X0I6
description Protein CTR9 homolog OS=Arabidopsis thaliana GN=VIP6 PE=1 SV=1
trembl
ID A0A022QK55
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000572mg PE=4 SV=1
Gene Ontology
ID GO:0000003
description rna polymerase-associated protein ctr9 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22248: 78788-78919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_080 0.0 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
2 Hb_000230_040 0.1557787769 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
3 Hb_000032_060 0.1755663469 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000088_020 0.18053719 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
5 Hb_000523_090 0.1872574777 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
6 Hb_000181_180 0.1901175438 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
7 Hb_003061_010 0.194569782 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
8 Hb_185679_010 0.1967672393 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
9 Hb_010642_030 0.1979735066 - - zinc phosphodiesterase, putative [Ricinus communis]
10 Hb_000239_070 0.200472061 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_006913_040 0.2007061867 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
12 Hb_002960_160 0.2022096832 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
13 Hb_009543_020 0.2031028782 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
14 Hb_002067_020 0.2040751003 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001301_210 0.2046690302 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
16 Hb_003206_030 0.20517452 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
17 Hb_000284_210 0.2062158507 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008518_050 0.2068956747 - - hypothetical protein F383_31148 [Gossypium arboreum]
19 Hb_002111_030 0.2076556961 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
20 Hb_005000_100 0.2077098739 - - PCI domain-containing protein 2 [Morus notabilis]

Gene co-expression network

sample Hb_002151_080 Hb_002151_080 Hb_000230_040 Hb_000230_040 Hb_002151_080--Hb_000230_040 Hb_000032_060 Hb_000032_060 Hb_002151_080--Hb_000032_060 Hb_000088_020 Hb_000088_020 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_003061_010 Hb_003061_010 Hb_002151_080--Hb_003061_010 Hb_000230_040--Hb_003061_010 Hb_000230_040--Hb_000088_020 Hb_002253_040 Hb_002253_040 Hb_000230_040--Hb_002253_040 Hb_000785_080 Hb_000785_080 Hb_000230_040--Hb_000785_080 Hb_170487_010 Hb_170487_010 Hb_000230_040--Hb_170487_010 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_010642_030 Hb_010642_030 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470 Hb_006913_040 Hb_006913_040 Hb_000088_020--Hb_006913_040 Hb_000333_100 Hb_000333_100 Hb_000088_020--Hb_000333_100 Hb_002942_160 Hb_002942_160 Hb_000088_020--Hb_002942_160 Hb_000866_030 Hb_000866_030 Hb_000088_020--Hb_000866_030 Hb_031862_180 Hb_031862_180 Hb_000088_020--Hb_031862_180 Hb_007643_050 Hb_007643_050 Hb_000088_020--Hb_007643_050 Hb_002067_020 Hb_002067_020 Hb_000523_090--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000523_090--Hb_000364_080 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000364_060 Hb_000364_060 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_003206_030 Hb_003206_030 Hb_000181_180--Hb_003206_030 Hb_000136_090 Hb_000136_090 Hb_000181_180--Hb_000136_090 Hb_012180_050 Hb_012180_050 Hb_000181_180--Hb_012180_050 Hb_000236_080 Hb_000236_080 Hb_000181_180--Hb_000236_080 Hb_001080_270 Hb_001080_270 Hb_000181_180--Hb_001080_270 Hb_001028_070 Hb_001028_070 Hb_000181_180--Hb_001028_070 Hb_126112_010 Hb_126112_010 Hb_003061_010--Hb_126112_010 Hb_000891_040 Hb_000891_040 Hb_003061_010--Hb_000891_040 Hb_156526_010 Hb_156526_010 Hb_003061_010--Hb_156526_010 Hb_005839_050 Hb_005839_050 Hb_003061_010--Hb_005839_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.406798 0.306292 0.0457887 0.0691769 0.399322 0.732666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.328156 0 0.227855 0.20346

CAGE analysis