Hb_002151_090

Information

Type transcription factor
Description TF Family: GRF
Location Contig2151: 83877-87022
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07140g
description hypothetical protein
nr
ID XP_012077032.1
description PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q6ZIK5
description Growth-regulating factor 4 OS=Oryza sativa subsp. japonica GN=GRF4 PE=2 SV=1
trembl
ID A0A067KNN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07476 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_090 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
2 Hb_001135_020 0.1474226853 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
3 Hb_000060_040 0.1528659588 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
4 Hb_002235_210 0.1534201773 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
5 Hb_006916_040 0.1539874455 - - 60S ribosomal protein L7a, putative [Ricinus communis]
6 Hb_000313_300 0.1562774315 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
7 Hb_141532_010 0.1582322478 - - PREDICTED: protein SMG9-like [Jatropha curcas]
8 Hb_004631_180 0.1592373459 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_000106_130 0.1596796844 - - unnamed protein product [Vitis vinifera]
10 Hb_008511_030 0.163927966 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
11 Hb_086063_010 0.164341098 - - soluble diacylglycerol acyltransferase [Ricinus communis]
12 Hb_000521_020 0.1644250103 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
13 Hb_000032_620 0.1646008126 - - hypothetical protein RCOM_1311830 [Ricinus communis]
14 Hb_140616_020 0.1673151557 - - -
15 Hb_000282_030 0.169593566 - - K(+) efflux antiporter 4 [Glycine soja]
16 Hb_002292_010 0.1726896523 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
17 Hb_004310_020 0.1734823645 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
18 Hb_097783_020 0.1735465419 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
19 Hb_003371_150 0.1738145002 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
20 Hb_005565_040 0.1742100556 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002151_090 Hb_002151_090 Hb_001135_020 Hb_001135_020 Hb_002151_090--Hb_001135_020 Hb_000060_040 Hb_000060_040 Hb_002151_090--Hb_000060_040 Hb_002235_210 Hb_002235_210 Hb_002151_090--Hb_002235_210 Hb_006916_040 Hb_006916_040 Hb_002151_090--Hb_006916_040 Hb_000313_300 Hb_000313_300 Hb_002151_090--Hb_000313_300 Hb_141532_010 Hb_141532_010 Hb_002151_090--Hb_141532_010 Hb_002292_010 Hb_002292_010 Hb_001135_020--Hb_002292_010 Hb_001288_080 Hb_001288_080 Hb_001135_020--Hb_001288_080 Hb_007007_050 Hb_007007_050 Hb_001135_020--Hb_007007_050 Hb_001828_200 Hb_001828_200 Hb_001135_020--Hb_001828_200 Hb_004324_340 Hb_004324_340 Hb_001135_020--Hb_004324_340 Hb_001135_020--Hb_141532_010 Hb_004310_020 Hb_004310_020 Hb_000060_040--Hb_004310_020 Hb_000780_060 Hb_000780_060 Hb_000060_040--Hb_000780_060 Hb_010712_030 Hb_010712_030 Hb_000060_040--Hb_010712_030 Hb_000796_210 Hb_000796_210 Hb_000060_040--Hb_000796_210 Hb_001358_030 Hb_001358_030 Hb_000060_040--Hb_001358_030 Hb_000343_160 Hb_000343_160 Hb_000060_040--Hb_000343_160 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_002235_210--Hb_006916_040 Hb_002235_210--Hb_004310_020 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_000106_130 Hb_000106_130 Hb_000313_300--Hb_000106_130 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000211_110 Hb_000211_110 Hb_000313_300--Hb_000211_110 Hb_001357_380 Hb_001357_380 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_000313_300--Hb_006916_040 Hb_000175_090 Hb_000175_090 Hb_141532_010--Hb_000175_090 Hb_141532_010--Hb_002292_010 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_004363_010 Hb_004363_010 Hb_141532_010--Hb_004363_010 Hb_005565_040 Hb_005565_040 Hb_141532_010--Hb_005565_040 Hb_141532_010--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10967 0.787995 0.393096 1.06636 0.942374 0.685392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.617644 0.857434 0.160223 0.240045 0.0594402

CAGE analysis