Hb_002151_100

Information

Type -
Description -
Location Contig2151: 92802-105041
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14550g
description hypothetical protein
nr
ID XP_012077033.1
description PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
swissprot
ID Q6NXD8
description DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2
trembl
ID B9MSY2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14550g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22253: 92860-101148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_100 0.0 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
2 Hb_009646_010 0.0940787259 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
3 Hb_002235_310 0.1010887217 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
4 Hb_053575_020 0.1068014286 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
5 Hb_003506_020 0.1085365978 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
6 Hb_000056_280 0.1104106742 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_000649_120 0.1150416083 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000110_300 0.1155135252 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
9 Hb_000205_250 0.1171634265 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
10 Hb_000805_190 0.1186122906 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
11 Hb_000072_020 0.1191854069 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
12 Hb_000000_120 0.1228105082 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
13 Hb_000866_110 0.1250440395 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
14 Hb_019654_110 0.125184086 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
15 Hb_004030_060 0.129497931 - - receptor protein kinase zmpk1, putative [Ricinus communis]
16 Hb_000331_510 0.131421537 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
17 Hb_000227_330 0.1342083203 - - Acyl-CoA synthetase [Ricinus communis]
18 Hb_000465_260 0.1345619228 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_001900_100 0.1347734577 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
20 Hb_002122_080 0.135492798 - - -

Gene co-expression network

sample Hb_002151_100 Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_002151_100--Hb_009646_010 Hb_002235_310 Hb_002235_310 Hb_002151_100--Hb_002235_310 Hb_053575_020 Hb_053575_020 Hb_002151_100--Hb_053575_020 Hb_003506_020 Hb_003506_020 Hb_002151_100--Hb_003506_020 Hb_000056_280 Hb_000056_280 Hb_002151_100--Hb_000056_280 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_000866_110 Hb_000866_110 Hb_002235_310--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_002235_310--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_002235_310--Hb_000125_180 Hb_002235_310--Hb_000649_120 Hb_011925_020 Hb_011925_020 Hb_002235_310--Hb_011925_020 Hb_000072_020 Hb_000072_020 Hb_002235_310--Hb_000072_020 Hb_011032_010 Hb_011032_010 Hb_053575_020--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_053575_020--Hb_000866_110 Hb_000000_120 Hb_000000_120 Hb_003506_020--Hb_000000_120 Hb_000216_020 Hb_000216_020 Hb_003506_020--Hb_000216_020 Hb_005970_010 Hb_005970_010 Hb_003506_020--Hb_005970_010 Hb_002122_080 Hb_002122_080 Hb_003506_020--Hb_002122_080 Hb_028077_020 Hb_028077_020 Hb_003506_020--Hb_028077_020 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000056_280--Hb_000465_260 Hb_000056_280--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_000649_120--Hb_000072_020 Hb_000649_120--Hb_000866_110 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000649_120--Hb_000000_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08559 13.4694 4.82681 12.3355 1.76993 2.26851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9791 2.59591 2.29688 13.0086 7.58793

CAGE analysis