Hb_002151_140

Information

Type -
Description -
Location Contig2151: 126757-130942
Sequence    

Annotation

kegg
ID pxb:103951965
description lichenase-2-like
nr
ID XP_009361737.1
description PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID M5VS03
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015919mg PE=3 SV=1
Gene Ontology
ID GO:0016787
description glucan endo- -beta-glucosidase gvi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_140 0.0 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
2 Hb_000784_050 0.0017305436 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
3 Hb_000280_070 0.0022552457 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
4 Hb_000307_080 0.0042171198 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000173_070 0.0052089493 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
6 Hb_003995_040 0.0058894322 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
7 Hb_000417_240 0.0060295604 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
8 Hb_003667_030 0.0067445001 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
9 Hb_000489_050 0.0088360714 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
10 Hb_007975_070 0.0109749909 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_000334_100 0.0123464559 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
12 Hb_105767_030 0.0123791794 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000008_100 0.0159200576 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
14 Hb_002391_280 0.0170017869 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
15 Hb_002817_020 0.0173712314 - - -
16 Hb_000221_010 0.0215738821 - - polyprotein [Oryza australiensis]
17 Hb_130862_010 0.0216367552 - - purine permease, putative [Ricinus communis]
18 Hb_090511_010 0.0238868626 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_012675_030 0.0241938663 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
20 Hb_001019_110 0.0245265797 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]

Gene co-expression network

sample Hb_002151_140 Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_002151_140--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_002151_140--Hb_000280_070 Hb_000307_080 Hb_000307_080 Hb_002151_140--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_002151_140--Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_002151_140--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_002151_140--Hb_000417_240 Hb_000784_050--Hb_000280_070 Hb_000784_050--Hb_000307_080 Hb_000784_050--Hb_000173_070 Hb_000784_050--Hb_003995_040 Hb_000784_050--Hb_000417_240 Hb_000280_070--Hb_000307_080 Hb_000280_070--Hb_000173_070 Hb_000280_070--Hb_003995_040 Hb_000280_070--Hb_000417_240 Hb_000307_080--Hb_000173_070 Hb_000307_080--Hb_003995_040 Hb_000307_080--Hb_000417_240 Hb_000173_070--Hb_003995_040 Hb_000173_070--Hb_000417_240 Hb_003995_040--Hb_000417_240 Hb_007975_070 Hb_007975_070 Hb_003995_040--Hb_007975_070 Hb_000417_240--Hb_007975_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.313743 0.0883856 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis