Hb_002151_150

Information

Type -
Description -
Location Contig2151: 128555-129877
Sequence    

Annotation

kegg
ID obr:102707106
description uncharacterized LOC102707106
nr
ID XP_006651032.1
description PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
swissprot
ID -
description -
trembl
ID I1R2N6
description Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_150 0.0 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
2 Hb_005050_030 0.0612322792 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
3 Hb_002701_170 0.0953365122 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
4 Hb_040718_010 0.0972654415 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
5 Hb_000365_440 0.1114685036 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
6 Hb_000560_060 0.12078642 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
7 Hb_006789_020 0.1218906868 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
8 Hb_010678_010 0.1221351918 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
9 Hb_006916_130 0.1288769499 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
10 Hb_176680_010 0.1313494691 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
11 Hb_119443_010 0.1337712369 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
12 Hb_005622_030 0.1400377746 - - transferase, putative [Ricinus communis]
13 Hb_006938_060 0.1407079159 - - nutrient reservoir, putative [Ricinus communis]
14 Hb_004709_030 0.14632459 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
15 Hb_023732_080 0.1488283058 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_000947_010 0.1512511454 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_026419_010 0.1517001393 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
18 Hb_002701_060 0.152117346 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009693_010 0.1545486028 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
20 Hb_004837_250 0.1550498553 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002151_150 Hb_002151_150 Hb_005050_030 Hb_005050_030 Hb_002151_150--Hb_005050_030 Hb_002701_170 Hb_002701_170 Hb_002151_150--Hb_002701_170 Hb_040718_010 Hb_040718_010 Hb_002151_150--Hb_040718_010 Hb_000365_440 Hb_000365_440 Hb_002151_150--Hb_000365_440 Hb_000560_060 Hb_000560_060 Hb_002151_150--Hb_000560_060 Hb_006789_020 Hb_006789_020 Hb_002151_150--Hb_006789_020 Hb_005050_030--Hb_040718_010 Hb_005050_030--Hb_000365_440 Hb_005050_030--Hb_002701_170 Hb_000947_010 Hb_000947_010 Hb_005050_030--Hb_000947_010 Hb_009693_010 Hb_009693_010 Hb_005050_030--Hb_009693_010 Hb_002701_060 Hb_002701_060 Hb_002701_170--Hb_002701_060 Hb_002701_170--Hb_000560_060 Hb_002701_170--Hb_006789_020 Hb_010678_010 Hb_010678_010 Hb_002701_170--Hb_010678_010 Hb_000072_110 Hb_000072_110 Hb_002701_170--Hb_000072_110 Hb_006938_060 Hb_006938_060 Hb_040718_010--Hb_006938_060 Hb_001369_460 Hb_001369_460 Hb_040718_010--Hb_001369_460 Hb_174168_010 Hb_174168_010 Hb_040718_010--Hb_174168_010 Hb_040718_010--Hb_000947_010 Hb_004709_030 Hb_004709_030 Hb_000365_440--Hb_004709_030 Hb_000880_040 Hb_000880_040 Hb_000365_440--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_000365_440--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000365_440--Hb_170023_010 Hb_019278_010 Hb_019278_010 Hb_000365_440--Hb_019278_010 Hb_000560_060--Hb_010678_010 Hb_000560_060--Hb_000072_110 Hb_000560_060--Hb_005050_030 Hb_000560_060--Hb_002701_060 Hb_068804_030 Hb_068804_030 Hb_006789_020--Hb_068804_030 Hb_006789_020--Hb_002701_060 Hb_006789_020--Hb_010678_010 Hb_026419_010 Hb_026419_010 Hb_006789_020--Hb_026419_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.232415 0.0715741 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.121828 0.202493

CAGE analysis