Hb_002153_010

Information

Type -
Description -
Location Contig2153: 2983-6325
Sequence    

Annotation

kegg
ID mdm:103404833
description uncharacterized LOC103404833
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002153_010 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_174107_010 0.1221682008 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
3 Hb_162999_010 0.1541436538 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_001488_110 0.1837496684 - - -
5 Hb_002188_100 0.1850545904 - - conserved hypothetical protein [Ricinus communis]
6 Hb_077562_040 0.1950206895 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
7 Hb_000048_090 0.2030337874 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
8 Hb_004025_030 0.2073915415 - - -
9 Hb_027445_060 0.212827544 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
10 Hb_002081_100 0.22120718 - - -
11 Hb_001095_060 0.2215403619 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
12 Hb_126398_010 0.2234365971 - - -
13 Hb_068946_010 0.2284837626 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
14 Hb_000463_050 0.2285334384 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
15 Hb_004098_030 0.2308243389 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_000563_530 0.2319619012 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
17 Hb_000612_070 0.2331538435 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000914_060 0.2368356628 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
19 Hb_004449_010 0.2370780505 - - lipase [Ricinus communis]
20 Hb_115919_010 0.2387765697 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_002153_010 Hb_002153_010 Hb_174107_010 Hb_174107_010 Hb_002153_010--Hb_174107_010 Hb_162999_010 Hb_162999_010 Hb_002153_010--Hb_162999_010 Hb_001488_110 Hb_001488_110 Hb_002153_010--Hb_001488_110 Hb_002188_100 Hb_002188_100 Hb_002153_010--Hb_002188_100 Hb_077562_040 Hb_077562_040 Hb_002153_010--Hb_077562_040 Hb_000048_090 Hb_000048_090 Hb_002153_010--Hb_000048_090 Hb_174107_010--Hb_162999_010 Hb_004116_110 Hb_004116_110 Hb_174107_010--Hb_004116_110 Hb_174107_010--Hb_001488_110 Hb_036285_010 Hb_036285_010 Hb_174107_010--Hb_036285_010 Hb_001095_060 Hb_001095_060 Hb_174107_010--Hb_001095_060 Hb_162999_010--Hb_000048_090 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_162999_010--Hb_001488_110 Hb_162999_010--Hb_002188_100 Hb_001488_110--Hb_077562_040 Hb_027445_060 Hb_027445_060 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_068946_010 Hb_068946_010 Hb_001488_110--Hb_068946_010 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_000463_050 Hb_000463_050 Hb_002188_100--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_002188_100--Hb_024505_030 Hb_001922_040 Hb_001922_040 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_077562_040--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_077562_040--Hb_023675_010 Hb_077562_040--Hb_004025_030 Hb_077562_040--Hb_000563_530 Hb_000366_100 Hb_000366_100 Hb_077562_040--Hb_000366_100 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_000048_090--Hb_126398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169566 0 0 0 0.134067 0.483911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15652 0.184577 0 0.0250074 0

CAGE analysis