Hb_002154_050

Information

Type -
Description -
Location Contig2154: 49880-53172
Sequence    

Annotation

kegg
ID rcu:RCOM_1620520
description RNA binding protein, putative
nr
ID XP_002512069.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q5R9L3
description Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1
trembl
ID B9RED0
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1620520 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras gtpase-activating protein-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22275: 49809-53879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_050 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_005779_100 0.0788693191 - - DNAJ [Theobroma cacao]
3 Hb_005539_290 0.0828109927 - - unknown [Lotus japonicus]
4 Hb_006602_010 0.0828749077 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
5 Hb_006602_020 0.0917374229 - - unknown [Medicago truncatula]
6 Hb_001473_130 0.0983820998 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
7 Hb_000479_330 0.0995552937 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
8 Hb_002357_040 0.1014494192 - - latex-abundant protein [Hevea brasiliensis]
9 Hb_000152_140 0.1037739126 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
10 Hb_002902_110 0.1055781738 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
11 Hb_000700_090 0.1136772096 - - protein with unknown function [Ricinus communis]
12 Hb_002025_320 0.1162293873 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
13 Hb_010710_030 0.1164205362 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
14 Hb_010174_120 0.1173432829 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
15 Hb_004735_010 0.1180473765 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
16 Hb_000696_110 0.1195269752 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
17 Hb_000048_050 0.1220706249 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
18 Hb_000221_270 0.1223761013 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
19 Hb_008066_010 0.1241968945 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
20 Hb_002686_270 0.1245997996 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002154_050 Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_002154_050--Hb_005779_100 Hb_005539_290 Hb_005539_290 Hb_002154_050--Hb_005539_290 Hb_006602_010 Hb_006602_010 Hb_002154_050--Hb_006602_010 Hb_006602_020 Hb_006602_020 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_005779_100--Hb_006602_020 Hb_005779_100--Hb_006602_010 Hb_001396_230 Hb_001396_230 Hb_005779_100--Hb_001396_230 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_005779_100--Hb_001473_130 Hb_001902_050 Hb_001902_050 Hb_005539_290--Hb_001902_050 Hb_005539_290--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_005539_290--Hb_000700_090 Hb_005539_290--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_006602_010--Hb_006602_020 Hb_006602_010--Hb_000700_090 Hb_004735_010 Hb_004735_010 Hb_006602_010--Hb_004735_010 Hb_006602_020--Hb_000700_090 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_006602_020--Hb_001902_050 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_003057_120 Hb_003057_120 Hb_000479_330--Hb_003057_120 Hb_000110_160 Hb_000110_160 Hb_000479_330--Hb_000110_160 Hb_000805_090 Hb_000805_090 Hb_000479_330--Hb_000805_090 Hb_001047_020 Hb_001047_020 Hb_000479_330--Hb_001047_020 Hb_000696_110 Hb_000696_110 Hb_000479_330--Hb_000696_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.261 30.4916 12.1282 56.6309 128.758 311.529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.457 122.917 320.271 74.7294 16.035

CAGE analysis