Hb_002154_100

Information

Type -
Description -
Location Contig2154: 78902-94830
Sequence    

Annotation

kegg
ID rcu:RCOM_1620390
description ATP-dependent RNA helicase, putative (EC:3.4.22.44)
nr
ID XP_012067796.1
description PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
swissprot
ID Q14562
description ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
trembl
ID A0A067KYU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15724 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_100 0.0 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
2 Hb_001014_160 0.053007337 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
3 Hb_000331_260 0.0644400851 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_007390_010 0.069372715 - - catalytic, putative [Ricinus communis]
5 Hb_156279_020 0.073447847 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
6 Hb_044728_010 0.075705198 - - -
7 Hb_110291_010 0.0763749823 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001860_050 0.0768504327 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
9 Hb_003847_130 0.0778288299 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
10 Hb_003878_070 0.0790561534 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
11 Hb_004841_010 0.0797206819 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
12 Hb_008785_040 0.080287335 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
13 Hb_001021_150 0.0807536106 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
14 Hb_004100_080 0.0810352216 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_640 0.0810654863 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
16 Hb_005496_130 0.0812324464 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
17 Hb_001902_030 0.0819758596 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
18 Hb_003525_010 0.0828291275 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
19 Hb_003125_120 0.0830439454 - - PREDICTED: TITAN-like protein [Jatropha curcas]
20 Hb_005269_070 0.0831759692 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]

Gene co-expression network

sample Hb_002154_100 Hb_002154_100 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010 Hb_004963_030 Hb_004963_030 Hb_001014_160--Hb_004963_030 Hb_001014_160--Hb_007390_010 Hb_001442_040 Hb_001442_040 Hb_001014_160--Hb_001442_040 Hb_001014_160--Hb_000331_260 Hb_001014_160--Hb_110291_010 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_001599_040 Hb_001599_040 Hb_007390_010--Hb_001599_040 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_007390_010--Hb_004143_060 Hb_007390_010--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_007390_010--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_007390_010--Hb_001021_150 Hb_156279_020--Hb_005269_070 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46657 1.51743 1.57774 1.64907 2.5343 2.83859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10608 3.37969 2.13602 2.35376 3.12285

CAGE analysis