Hb_002154_120

Information

Type -
Description -
Location Contig2154: 130692-132959
Sequence    

Annotation

kegg
ID gmx:100806065
description uncharacterized LOC100806065
nr
ID XP_012067806.1
description PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
swissprot
ID Q04ZJ3
description Ribosome maturation factor RimP OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1
trembl
ID A0A067KYV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15729 PE=4 SV=1
Gene Ontology
ID GO:0009560
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22282: 130717-132958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_120 0.0 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
2 Hb_012022_160 0.0796664397 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
3 Hb_010068_040 0.084660662 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
4 Hb_000236_240 0.0850126533 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
5 Hb_006120_070 0.0856816152 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
6 Hb_000690_130 0.0865934497 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
7 Hb_120410_010 0.0872486543 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
8 Hb_005365_020 0.0874046242 - - hypothetical protein JCGZ_15105 [Jatropha curcas]
9 Hb_000174_110 0.0875357053 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
10 Hb_003086_070 0.0878566184 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
11 Hb_005618_160 0.0896050783 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
12 Hb_002367_130 0.0897711681 - - UNC-50 family protein isoform 1 [Theobroma cacao]
13 Hb_001329_130 0.0907686716 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004310_150 0.0915204079 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
15 Hb_000342_130 0.0917787893 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
16 Hb_001635_180 0.0921803763 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
17 Hb_006064_010 0.0933158414 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
18 Hb_001586_040 0.0933940057 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
19 Hb_004032_430 0.0943145335 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
20 Hb_002530_030 0.0948905747 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002154_120 Hb_002154_120 Hb_012022_160 Hb_012022_160 Hb_002154_120--Hb_012022_160 Hb_010068_040 Hb_010068_040 Hb_002154_120--Hb_010068_040 Hb_000236_240 Hb_000236_240 Hb_002154_120--Hb_000236_240 Hb_006120_070 Hb_006120_070 Hb_002154_120--Hb_006120_070 Hb_000690_130 Hb_000690_130 Hb_002154_120--Hb_000690_130 Hb_120410_010 Hb_120410_010 Hb_002154_120--Hb_120410_010 Hb_000428_050 Hb_000428_050 Hb_012022_160--Hb_000428_050 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_006185_050 Hb_006185_050 Hb_012022_160--Hb_006185_050 Hb_001195_760 Hb_001195_760 Hb_012022_160--Hb_001195_760 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_000260_100 Hb_000260_100 Hb_000236_240--Hb_000260_100 Hb_001329_130 Hb_001329_130 Hb_000236_240--Hb_001329_130 Hb_002997_080 Hb_002997_080 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_005697_060 Hb_005697_060 Hb_006120_070--Hb_005697_060 Hb_002918_030 Hb_002918_030 Hb_006120_070--Hb_002918_030 Hb_024847_010 Hb_024847_010 Hb_006120_070--Hb_024847_010 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_006064_010 Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10959 3.99219 6.81627 3.75321 12.4234 8.56747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83888 9.46794 4.90649 4.08259 4.87422

CAGE analysis