Hb_002157_090

Information

Type -
Description -
Location Contig2157: 66571-72778
Sequence    

Annotation

kegg
ID cit:102625693
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID CAN70102.1
description hypothetical protein VITISV_041741 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BFI9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041741 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22293: 71965-73328 , PASA_asmbl_22294: 73189-73328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_090 0.0 - - hypothetical protein VITISV_041741 [Vitis vinifera]
2 Hb_001584_030 0.1389731366 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
3 Hb_001563_020 0.1503730457 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
4 Hb_004241_010 0.1774540632 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_015586_010 0.2421224581 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
6 Hb_012379_010 0.2518435423 - - -
7 Hb_012008_010 0.2521682815 - - -
8 Hb_118094_010 0.2559416226 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
9 Hb_029243_010 0.2586683426 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
10 Hb_000111_230 0.2600971732 - - -
11 Hb_005045_050 0.2618744325 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
12 Hb_000414_150 0.2624021201 - - mta/sah nucleosidase, putative [Ricinus communis]
13 Hb_000603_010 0.2717237511 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
14 Hb_133661_010 0.272707228 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
15 Hb_002081_170 0.2727573027 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_001022_040 0.3003507635 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
17 Hb_004116_130 0.3004772307 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_004200_030 0.3079638449 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
19 Hb_004102_030 0.3085460526 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
20 Hb_006816_400 0.312659742 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_090 Hb_002157_090 Hb_001584_030 Hb_001584_030 Hb_002157_090--Hb_001584_030 Hb_001563_020 Hb_001563_020 Hb_002157_090--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_002157_090--Hb_004241_010 Hb_015586_010 Hb_015586_010 Hb_002157_090--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_002157_090--Hb_012379_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_000603_010 Hb_000603_010 Hb_001584_030--Hb_000603_010 Hb_001584_030--Hb_001563_020 Hb_001584_030--Hb_004241_010 Hb_133661_010 Hb_133661_010 Hb_001584_030--Hb_133661_010 Hb_001355_120 Hb_001355_120 Hb_001584_030--Hb_001355_120 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_001563_020--Hb_000603_010 Hb_000414_150 Hb_000414_150 Hb_001563_020--Hb_000414_150 Hb_001563_020--Hb_004241_010 Hb_004241_010--Hb_012379_010 Hb_000111_230 Hb_000111_230 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_004241_010--Hb_000414_150 Hb_090065_010 Hb_090065_010 Hb_015586_010--Hb_090065_010 Hb_118094_010 Hb_118094_010 Hb_015586_010--Hb_118094_010 Hb_015586_010--Hb_001584_030 Hb_001959_250 Hb_001959_250 Hb_015586_010--Hb_001959_250 Hb_009976_010 Hb_009976_010 Hb_015586_010--Hb_009976_010 Hb_012379_010--Hb_090065_010 Hb_001269_290 Hb_001269_290 Hb_012379_010--Hb_001269_290 Hb_012379_010--Hb_015586_010 Hb_012379_010--Hb_000111_230 Hb_029243_010 Hb_029243_010 Hb_012008_010--Hb_029243_010 Hb_001771_080 Hb_001771_080 Hb_012008_010--Hb_001771_080 Hb_004102_030 Hb_004102_030 Hb_012008_010--Hb_004102_030 Hb_007558_020 Hb_007558_020 Hb_012008_010--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_012008_010--Hb_000418_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0866169 0.0259279 0.131174 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158347 0.124486 0 0 0

CAGE analysis