Hb_002157_100

Information

Type -
Description -
Location Contig2157: 72893-74246
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22293: 71965-73328 , PASA_asmbl_22294: 73189-73328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_100 0.0 - - -
2 Hb_003413_020 0.1005894663 - - -
3 Hb_000862_060 0.1145264258 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002045_260 0.114610547 - - calmodulin, putative [Ricinus communis]
5 Hb_008080_030 0.1152157498 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
6 Hb_007017_110 0.1229336072 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_002374_360 0.131836809 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
8 Hb_004703_010 0.1465028332 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_000656_120 0.1586083668 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
10 Hb_042098_010 0.1608907045 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_006262_030 0.1612693346 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_004544_010 0.1654888029 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
13 Hb_001288_020 0.1681226611 - - -
14 Hb_003751_050 0.1701495226 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
15 Hb_001005_170 0.1707668501 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_043522_010 0.1850608176 - - -
17 Hb_001832_240 0.1885005675 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
18 Hb_001532_060 0.1972884006 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_000046_590 0.2001925906 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_001971_030 0.2016036137 - - PREDICTED: exonuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_100 Hb_002157_100 Hb_003413_020 Hb_003413_020 Hb_002157_100--Hb_003413_020 Hb_000862_060 Hb_000862_060 Hb_002157_100--Hb_000862_060 Hb_002045_260 Hb_002045_260 Hb_002157_100--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_002157_100--Hb_008080_030 Hb_007017_110 Hb_007017_110 Hb_002157_100--Hb_007017_110 Hb_002374_360 Hb_002374_360 Hb_002157_100--Hb_002374_360 Hb_001288_020 Hb_001288_020 Hb_003413_020--Hb_001288_020 Hb_003413_020--Hb_008080_030 Hb_004703_010 Hb_004703_010 Hb_003413_020--Hb_004703_010 Hb_001922_020 Hb_001922_020 Hb_003413_020--Hb_001922_020 Hb_001005_170 Hb_001005_170 Hb_003413_020--Hb_001005_170 Hb_000862_060--Hb_002374_360 Hb_055147_010 Hb_055147_010 Hb_000862_060--Hb_055147_010 Hb_003751_050 Hb_003751_050 Hb_000862_060--Hb_003751_050 Hb_000862_060--Hb_008080_030 Hb_043522_010 Hb_043522_010 Hb_000862_060--Hb_043522_010 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_042098_010 Hb_042098_010 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002045_260--Hb_002374_360 Hb_002045_260--Hb_007017_110 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_000046_590 Hb_000046_590 Hb_008080_030--Hb_000046_590 Hb_008080_030--Hb_042098_010 Hb_008080_030--Hb_004703_010 Hb_007017_110--Hb_000656_120 Hb_007017_110--Hb_004703_010 Hb_007654_010 Hb_007654_010 Hb_007017_110--Hb_007654_010 Hb_007017_110--Hb_001005_170 Hb_002374_360--Hb_003751_050 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002374_360--Hb_008080_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105117 0.20816 0.0539023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.115831 0

CAGE analysis