Hb_002157_110

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2157: 80399-82501
Sequence    

Annotation

kegg
ID rcu:RCOM_0275800
description Transcription factor ICE1, putative
nr
ID XP_002534354.1
description Transcription factor ICE1, putative [Ricinus communis]
swissprot
ID Q8GX46
description Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1
trembl
ID B9T7Y5
description Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_0275800 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh91-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_110 0.0 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
2 Hb_004899_240 0.0030699791 - - conserved hypothetical protein [Ricinus communis]
3 Hb_036116_010 0.0053663226 - - JHL22C18.10 [Jatropha curcas]
4 Hb_005333_090 0.0063654754 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
5 Hb_090521_010 0.0070770361 - - Major allergen Pru ar, putative [Ricinus communis]
6 Hb_003038_020 0.0071238676 - - unnamed protein product [Coffea canephora]
7 Hb_003687_060 0.0078503156 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000471_130 0.0095553412 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002217_010 0.0104495397 - - Peroxiredoxin, putative [Ricinus communis]
10 Hb_005356_020 0.0115580315 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_001552_010 0.0122872909 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001002_010 0.0153708669 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010128_140 0.0157582624 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
14 Hb_006663_120 0.0165748915 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000679_180 0.0168719692 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_007227_020 0.0172910739 - - -
17 Hb_003849_210 0.0183033153 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
18 Hb_015447_010 0.0245716186 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
19 Hb_006198_160 0.0267800463 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
20 Hb_002007_030 0.0282577649 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002157_110 Hb_002157_110 Hb_004899_240 Hb_004899_240 Hb_002157_110--Hb_004899_240 Hb_036116_010 Hb_036116_010 Hb_002157_110--Hb_036116_010 Hb_005333_090 Hb_005333_090 Hb_002157_110--Hb_005333_090 Hb_090521_010 Hb_090521_010 Hb_002157_110--Hb_090521_010 Hb_003038_020 Hb_003038_020 Hb_002157_110--Hb_003038_020 Hb_003687_060 Hb_003687_060 Hb_002157_110--Hb_003687_060 Hb_004899_240--Hb_005333_090 Hb_004899_240--Hb_003038_020 Hb_004899_240--Hb_003687_060 Hb_004899_240--Hb_036116_010 Hb_005356_020 Hb_005356_020 Hb_004899_240--Hb_005356_020 Hb_036116_010--Hb_090521_010 Hb_000471_130 Hb_000471_130 Hb_036116_010--Hb_000471_130 Hb_002217_010 Hb_002217_010 Hb_036116_010--Hb_002217_010 Hb_001002_010 Hb_001002_010 Hb_036116_010--Hb_001002_010 Hb_005333_090--Hb_003038_020 Hb_005333_090--Hb_003687_060 Hb_005333_090--Hb_005356_020 Hb_001552_010 Hb_001552_010 Hb_005333_090--Hb_001552_010 Hb_090521_010--Hb_000471_130 Hb_090521_010--Hb_002217_010 Hb_090521_010--Hb_001002_010 Hb_006663_120 Hb_006663_120 Hb_090521_010--Hb_006663_120 Hb_003038_020--Hb_003687_060 Hb_003038_020--Hb_005356_020 Hb_003038_020--Hb_001552_010 Hb_003687_060--Hb_005356_020 Hb_003687_060--Hb_001552_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0208352 0.140817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis