Hb_002157_180

Information

Type -
Description -
Location Contig2157: 106190-106642
Sequence    

Annotation

kegg
ID rcu:RCOM_1374500
description separase, putative (EC:3.4.22.49)
nr
ID XP_002529003.1
description separase, putative [Ricinus communis]
swissprot
ID Q5IBC5
description Separase OS=Arabidopsis thaliana GN=ESP1 PE=2 SV=1
trembl
ID B9SSN4
description Separase, putative OS=Ricinus communis GN=RCOM_1374500 PE=4 SV=1
Gene Ontology
ID GO:0005634
description separase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_180 0.0 - - separase, putative [Ricinus communis]
2 Hb_008111_020 0.0623104751 - - Receptor like protein 6, putative [Theobroma cacao]
3 Hb_001652_050 0.0729126356 - - -
4 Hb_047923_010 0.0896654713 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
5 Hb_157122_010 0.0924020247 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
6 Hb_003752_130 0.09955764 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
7 Hb_003085_050 0.1014468345 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
8 Hb_023774_010 0.1026717115 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
9 Hb_000613_270 0.1032650783 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_012702_020 0.1186065062 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
11 Hb_003086_180 0.128876166 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
12 Hb_015912_010 0.1453828776 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002553_080 0.1556606145 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
14 Hb_001006_200 0.1560172121 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
15 Hb_079158_010 0.1563733493 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
16 Hb_000101_060 0.1570878732 - - -
17 Hb_002400_250 0.1577769835 - - amino acid binding protein, putative [Ricinus communis]
18 Hb_000462_020 0.159664704 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000059_290 0.1615177154 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
20 Hb_000343_280 0.1745854258 - - hypothetical protein JCGZ_24094 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_180 Hb_002157_180 Hb_008111_020 Hb_008111_020 Hb_002157_180--Hb_008111_020 Hb_001652_050 Hb_001652_050 Hb_002157_180--Hb_001652_050 Hb_047923_010 Hb_047923_010 Hb_002157_180--Hb_047923_010 Hb_157122_010 Hb_157122_010 Hb_002157_180--Hb_157122_010 Hb_003752_130 Hb_003752_130 Hb_002157_180--Hb_003752_130 Hb_003085_050 Hb_003085_050 Hb_002157_180--Hb_003085_050 Hb_008111_020--Hb_003752_130 Hb_008111_020--Hb_047923_010 Hb_008111_020--Hb_001652_050 Hb_000613_270 Hb_000613_270 Hb_008111_020--Hb_000613_270 Hb_000059_290 Hb_000059_290 Hb_008111_020--Hb_000059_290 Hb_023774_010 Hb_023774_010 Hb_001652_050--Hb_023774_010 Hb_001652_050--Hb_000613_270 Hb_003086_180 Hb_003086_180 Hb_001652_050--Hb_003086_180 Hb_001652_050--Hb_047923_010 Hb_047923_010--Hb_000613_270 Hb_047923_010--Hb_023774_010 Hb_047923_010--Hb_003086_180 Hb_157122_010--Hb_003085_050 Hb_002553_080 Hb_002553_080 Hb_157122_010--Hb_002553_080 Hb_002766_040 Hb_002766_040 Hb_157122_010--Hb_002766_040 Hb_014113_010 Hb_014113_010 Hb_157122_010--Hb_014113_010 Hb_007735_010 Hb_007735_010 Hb_157122_010--Hb_007735_010 Hb_012702_020 Hb_012702_020 Hb_003752_130--Hb_012702_020 Hb_015912_010 Hb_015912_010 Hb_003752_130--Hb_015912_010 Hb_000101_060 Hb_000101_060 Hb_003752_130--Hb_000101_060 Hb_000291_020 Hb_000291_020 Hb_003752_130--Hb_000291_020 Hb_003085_050--Hb_002553_080 Hb_003085_050--Hb_002766_040 Hb_003085_050--Hb_007735_010 Hb_003085_050--Hb_014113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116622 0.0522826 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.157096 0

CAGE analysis