Hb_002157_190

Information

Type -
Description -
Location Contig2157: 108414-111986
Sequence    

Annotation

kegg
ID pop:POPTR_0011s15980g
description POPTRDRAFT_569318; acidic ribosomal protein P0
nr
ID XP_012065661.1
description PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
swissprot
ID A4FV84
description mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1
trembl
ID A0A067LGD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16917 PE=3 SV=1
Gene Ontology
ID GO:0005829
description mrna turnover protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22301: 108462-112005 , PASA_asmbl_22302: 111370-111625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_190 0.0 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
2 Hb_009411_020 0.1012796697 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
3 Hb_000175_390 0.1107673582 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
4 Hb_001616_090 0.1158307057 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
5 Hb_012132_040 0.1160204274 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
6 Hb_000156_140 0.1168099882 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
7 Hb_000088_200 0.1224978277 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_024714_020 0.1228021528 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_035318_010 0.1252286166 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
10 Hb_152453_010 0.1269453389 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
11 Hb_005846_020 0.1273772661 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
12 Hb_000787_170 0.1280937198 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
13 Hb_046931_010 0.1285682653 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
14 Hb_002774_070 0.1303193739 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
15 Hb_175612_010 0.1308771864 transcription factor TF Family: MBF1 orf [Ricinus communis]
16 Hb_173178_020 0.1315435107 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
17 Hb_000035_400 0.131572441 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
18 Hb_004102_100 0.1315973027 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
19 Hb_000072_140 0.1316115062 - - -
20 Hb_003006_060 0.1316717764 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_190 Hb_002157_190 Hb_009411_020 Hb_009411_020 Hb_002157_190--Hb_009411_020 Hb_000175_390 Hb_000175_390 Hb_002157_190--Hb_000175_390 Hb_001616_090 Hb_001616_090 Hb_002157_190--Hb_001616_090 Hb_012132_040 Hb_012132_040 Hb_002157_190--Hb_012132_040 Hb_000156_140 Hb_000156_140 Hb_002157_190--Hb_000156_140 Hb_000088_200 Hb_000088_200 Hb_002157_190--Hb_000088_200 Hb_009411_020--Hb_000156_140 Hb_009411_020--Hb_001616_090 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_000175_390--Hb_000088_200 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_000175_390--Hb_000156_140 Hb_001616_090--Hb_000186_280 Hb_031091_010 Hb_031091_010 Hb_001616_090--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_001341_050 Hb_001341_050 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.999 24.4595 32.6734 18.9136 56.8201 117.975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8654 38.0969 22.483 16.2477 10.9448

CAGE analysis