Hb_002157_260

Information

Type -
Description -
Location Contig2157: 138211-145361
Sequence    

Annotation

kegg
ID rcu:RCOM_1411970
description protein with unknown function
nr
ID XP_012065663.1
description PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
swissprot
ID Q6PH11
description Partner of Y14 and mago OS=Danio rerio GN=wibg PE=2 SV=1
trembl
ID A0A067L8S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16920 PE=4 SV=1
Gene Ontology
ID GO:0005654
description partner of y14 and mago

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_260 0.0 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
2 Hb_005965_030 0.0534358683 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
3 Hb_002045_150 0.0607222558 - - histone acetyltransferase gcn5, putative [Ricinus communis]
4 Hb_000160_350 0.0733302645 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
5 Hb_006452_160 0.0775353577 - - structural constituent of ribosome, putative [Ricinus communis]
6 Hb_006960_050 0.0788042366 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_001408_100 0.080139632 - - pseudouridylate synthase, putative [Ricinus communis]
8 Hb_001545_200 0.0801473456 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
9 Hb_000771_180 0.0814052127 - - polypyrimidine tract binding protein, putative [Ricinus communis]
10 Hb_004785_100 0.0815491497 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032208_040 0.0816345344 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
12 Hb_003680_230 0.0818437407 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
13 Hb_006658_040 0.0818447421 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
14 Hb_005188_060 0.0836325375 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
15 Hb_002739_130 0.0841265158 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
16 Hb_021422_010 0.0847654749 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
17 Hb_000563_330 0.085943683 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_000959_270 0.0866725008 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
19 Hb_018790_070 0.0868730637 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
20 Hb_000334_270 0.0889521697 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_260 Hb_002157_260 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_005965_030--Hb_000160_350 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_002045_150--Hb_006452_160 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000160_350--Hb_000771_180 Hb_000160_350--Hb_022256_060 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_003029_030 Hb_003029_030 Hb_001408_100--Hb_003029_030 Hb_131646_010 Hb_131646_010 Hb_001408_100--Hb_131646_010 Hb_001408_100--Hb_000160_350 Hb_001408_100--Hb_005965_030 Hb_001408_100--Hb_000771_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2296 8.64653 9.99481 4.32397 13.7623 8.45382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88088 6.24306 3.46055 5.59665 3.56208

CAGE analysis