Hb_002157_270

Information

Type -
Description -
Location Contig2157: 146418-150785
Sequence    

Annotation

kegg
ID rcu:RCOM_1411850
description ptm1, putative
nr
ID XP_012071370.1
description PREDICTED: transmembrane protein 87B [Jatropha curcas]
swissprot
ID Q8BKU8
description Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1
trembl
ID A0A067L472
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05056 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transmembrane protein 87b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22304: 146532-146941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_270 0.0 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
2 Hb_011310_040 0.1117354711 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
3 Hb_002129_020 0.1134371916 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
4 Hb_000950_030 0.1143793085 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
5 Hb_002596_080 0.115654222 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
6 Hb_001493_060 0.1183107278 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
7 Hb_002164_020 0.1226248847 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001195_090 0.1275913158 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
9 Hb_004055_020 0.1336130669 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
10 Hb_000445_150 0.1352116594 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
11 Hb_009674_010 0.1454379275 - - AAEL007687-PA [Aedes aegypti]
12 Hb_005348_110 0.145495346 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_000300_410 0.1490611231 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
14 Hb_012707_010 0.1492884164 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
15 Hb_000580_110 0.1513460484 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
16 Hb_000011_220 0.152096808 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
17 Hb_001216_110 0.1540565361 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_009913_040 0.1551325994 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
19 Hb_000107_350 0.1563229638 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
20 Hb_000671_130 0.1572876819 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_270 Hb_002157_270 Hb_011310_040 Hb_011310_040 Hb_002157_270--Hb_011310_040 Hb_002129_020 Hb_002129_020 Hb_002157_270--Hb_002129_020 Hb_000950_030 Hb_000950_030 Hb_002157_270--Hb_000950_030 Hb_002596_080 Hb_002596_080 Hb_002157_270--Hb_002596_080 Hb_001493_060 Hb_001493_060 Hb_002157_270--Hb_001493_060 Hb_002164_020 Hb_002164_020 Hb_002157_270--Hb_002164_020 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_001195_090 Hb_001195_090 Hb_002129_020--Hb_001195_090 Hb_001216_110 Hb_001216_110 Hb_002129_020--Hb_001216_110 Hb_020586_010 Hb_020586_010 Hb_002129_020--Hb_020586_010 Hb_009674_010 Hb_009674_010 Hb_002129_020--Hb_009674_010 Hb_028639_030 Hb_028639_030 Hb_002129_020--Hb_028639_030 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_002596_080--Hb_001493_060 Hb_002596_080--Hb_003226_250 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150 Hb_001493_060--Hb_002164_020 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_000580_110 Hb_000580_110 Hb_001493_060--Hb_000580_110 Hb_001493_060--Hb_001195_090 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_002164_020--Hb_009079_050 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23203 1.23591 4.98297 28.5517 2.20709 3.43007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91856 2.71248 3.31851 5.16121 17.367

CAGE analysis