Hb_002159_030

Information

Type -
Description -
Location Contig2159: 63459-75555
Sequence    

Annotation

kegg
ID rcu:RCOM_0867610
description AP-1 complex subunit gamma-2, putative
nr
ID XP_002519936.1
description AP-1 complex subunit gamma-2, putative [Ricinus communis]
swissprot
ID Q8L7A9
description AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1
trembl
ID B9S1S1
description AP-1 complex subunit gamma-2, putative OS=Ricinus communis GN=RCOM_0867610 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002159_030 0.0 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
2 Hb_002159_040 0.0893318557 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
3 Hb_006882_010 0.1262902173 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
4 Hb_000441_160 0.1285454929 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_000329_490 0.1291150151 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
6 Hb_000244_240 0.1292154555 - - ATP binding protein, putative [Ricinus communis]
7 Hb_004143_070 0.1318899532 - - cytochrome P450, putative [Ricinus communis]
8 Hb_003436_050 0.1329287479 - - arf gtpase-activating protein, putative [Ricinus communis]
9 Hb_002918_070 0.1337895859 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
10 Hb_011497_010 0.1348100728 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
11 Hb_005000_270 0.1362170225 - - unnamed protein product [Vitis vinifera]
12 Hb_000199_080 0.1364133888 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003243_020 0.1368399304 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
14 Hb_010189_010 0.1381414811 - - -
15 Hb_000256_210 0.1387550359 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
16 Hb_007348_030 0.1388583323 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
17 Hb_030627_040 0.1401604715 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
18 Hb_005460_030 0.140986687 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
19 Hb_007668_020 0.1438953209 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
20 Hb_031069_020 0.1450578529 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002159_030 Hb_002159_030 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_002159_040--Hb_000441_160 Hb_002159_040--Hb_004143_070 Hb_002159_040--Hb_000329_490 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_007348_030 Hb_007348_030 Hb_000441_160--Hb_007348_030 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000120_510 Hb_000120_510 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_004143_070--Hb_046615_020 Hb_002493_090 Hb_002493_090 Hb_004143_070--Hb_002493_090 Hb_000181_310 Hb_000181_310 Hb_004143_070--Hb_000181_310 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0749 6.81159 5.51554 6.65838 30.8406 41.9615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31978 2.10668 6.74473 4.23745 9.04403

CAGE analysis