Hb_002159_040

Information

Type -
Description -
Location Contig2159: 106960-112182
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001563mg
description hypothetical protein
nr
ID XP_007218924.1
description hypothetical protein PRUPE_ppa001563mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XF37
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001563mg PE=4 SV=1
Gene Ontology
ID GO:0030117
description ap-4 complex subunit epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22338: 101422-111951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002159_040 0.0 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
2 Hb_000244_240 0.0695640609 - - ATP binding protein, putative [Ricinus communis]
3 Hb_011497_010 0.0797717372 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
4 Hb_000441_160 0.0884656761 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_004143_070 0.0892847839 - - cytochrome P450, putative [Ricinus communis]
6 Hb_002159_030 0.0893318557 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
7 Hb_000329_490 0.0923658245 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
8 Hb_001040_120 0.0947729837 - - allantoinase, putative [Ricinus communis]
9 Hb_003436_050 0.0989576642 - - arf gtpase-activating protein, putative [Ricinus communis]
10 Hb_018954_020 0.0995811697 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
11 Hb_007668_020 0.1012286285 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
12 Hb_000199_080 0.1027620973 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008406_140 0.1041045183 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_003716_020 0.1048213075 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
15 Hb_002739_080 0.1062935241 - - cystathionine beta-lyase, putative [Ricinus communis]
16 Hb_005129_050 0.1065538253 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_003018_160 0.1071365035 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
18 Hb_005000_270 0.1071671166 - - unnamed protein product [Vitis vinifera]
19 Hb_002475_050 0.1083776815 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_004920_060 0.1087054222 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002159_040 Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000120_510 Hb_000120_510 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_003018_160 Hb_003018_160 Hb_011497_010--Hb_003018_160 Hb_003716_020 Hb_003716_020 Hb_011497_010--Hb_003716_020 Hb_001575_080 Hb_001575_080 Hb_011497_010--Hb_001575_080 Hb_011497_010--Hb_000244_240 Hb_000116_280 Hb_000116_280 Hb_011497_010--Hb_000116_280 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_000441_160--Hb_003716_020 Hb_000441_160--Hb_007348_030 Hb_004143_070--Hb_046615_020 Hb_002493_090 Hb_002493_090 Hb_004143_070--Hb_002493_090 Hb_000181_310 Hb_000181_310 Hb_004143_070--Hb_000181_310 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_002159_030--Hb_000441_160 Hb_002159_030--Hb_000329_490 Hb_002159_030--Hb_000244_240 Hb_002159_030--Hb_004143_070 Hb_022250_110 Hb_022250_110 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6012 6.7155 6.74739 6.9477 20.9594 32.4807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27519 2.89644 6.53698 4.59244 5.76056

CAGE analysis