Hb_002161_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2161: 51778-59082
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05770g
description hypothetical protein
nr
ID XP_002308062.2
description hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
swissprot
ID Q41558
description Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2
trembl
ID B9HA88
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s05770g PE=4 SV=2
Gene Ontology
ID GO:0003700
description transcription factor hbp-1b -like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22361: 52185-58830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002161_020 0.0 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
2 Hb_012506_080 0.1162550876 - - amino acid transporter, putative [Ricinus communis]
3 Hb_022250_050 0.1200606951 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001456_040 0.120780591 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
5 Hb_000109_110 0.1281814046 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_000500_190 0.1314355273 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
7 Hb_004254_070 0.1314593808 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
8 Hb_014034_020 0.131538842 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
9 Hb_003891_060 0.1316987567 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
10 Hb_000446_100 0.132012432 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
11 Hb_001140_330 0.1327277859 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
12 Hb_003188_020 0.1327772951 - - chitinase, putative [Ricinus communis]
13 Hb_000828_030 0.1336990978 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_003446_030 0.1337833679 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_000155_140 0.1340640734 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_002818_080 0.1355524944 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
17 Hb_001301_020 0.1361055879 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
18 Hb_000141_210 0.1363507376 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
19 Hb_002553_170 0.1367148895 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
20 Hb_153208_010 0.1367537402 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002161_020 Hb_002161_020 Hb_012506_080 Hb_012506_080 Hb_002161_020--Hb_012506_080 Hb_022250_050 Hb_022250_050 Hb_002161_020--Hb_022250_050 Hb_001456_040 Hb_001456_040 Hb_002161_020--Hb_001456_040 Hb_000109_110 Hb_000109_110 Hb_002161_020--Hb_000109_110 Hb_000500_190 Hb_000500_190 Hb_002161_020--Hb_000500_190 Hb_004254_070 Hb_004254_070 Hb_002161_020--Hb_004254_070 Hb_005433_050 Hb_005433_050 Hb_012506_080--Hb_005433_050 Hb_000388_160 Hb_000388_160 Hb_012506_080--Hb_000388_160 Hb_000203_240 Hb_000203_240 Hb_012506_080--Hb_000203_240 Hb_002835_020 Hb_002835_020 Hb_012506_080--Hb_002835_020 Hb_004267_050 Hb_004267_050 Hb_012506_080--Hb_004267_050 Hb_039363_010 Hb_039363_010 Hb_012506_080--Hb_039363_010 Hb_002553_170 Hb_002553_170 Hb_022250_050--Hb_002553_170 Hb_001040_190 Hb_001040_190 Hb_022250_050--Hb_001040_190 Hb_001930_060 Hb_001930_060 Hb_022250_050--Hb_001930_060 Hb_022250_050--Hb_002835_020 Hb_001301_020 Hb_001301_020 Hb_022250_050--Hb_001301_020 Hb_001140_330 Hb_001140_330 Hb_022250_050--Hb_001140_330 Hb_020480_050 Hb_020480_050 Hb_001456_040--Hb_020480_050 Hb_000446_100 Hb_000446_100 Hb_001456_040--Hb_000446_100 Hb_009568_010 Hb_009568_010 Hb_001456_040--Hb_009568_010 Hb_001456_040--Hb_000500_190 Hb_000141_070 Hb_000141_070 Hb_001456_040--Hb_000141_070 Hb_001456_040--Hb_004254_070 Hb_000086_710 Hb_000086_710 Hb_000109_110--Hb_000086_710 Hb_000109_110--Hb_009568_010 Hb_003334_080 Hb_003334_080 Hb_000109_110--Hb_003334_080 Hb_109163_010 Hb_109163_010 Hb_000109_110--Hb_109163_010 Hb_000109_110--Hb_001930_060 Hb_000109_110--Hb_002553_170 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_014034_020 Hb_014034_020 Hb_000500_190--Hb_014034_020 Hb_000500_190--Hb_004254_070 Hb_003188_020 Hb_003188_020 Hb_000500_190--Hb_003188_020 Hb_000500_190--Hb_000446_100 Hb_000500_190--Hb_001301_020 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_000446_100 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0231279 0.0477283 0.0284213 0.0142676 0 0.0178304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0333513 0 2.09534 0

CAGE analysis