Hb_002163_020

Information

Type transcription factor
Description TF Family: PHD
Location Contig2163: 18321-27101
Sequence    

Annotation

kegg
ID tcc:TCM_002152
description PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 1
nr
ID XP_012080629.1
description PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q9WTU0
description Lysine-specific demethylase PHF2 OS=Mus musculus GN=Phf2 PE=1 SV=2
trembl
ID A0A067K3V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13735 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bah and coiled-coil domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22368: 18401-27061 , PASA_asmbl_22369: 24884-25384 , PASA_asmbl_22370: 24596-24799 , PASA_asmbl_22371: 25409-25663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_020 0.0 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
2 Hb_011224_110 0.0702008414 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
3 Hb_029866_060 0.0733021261 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
4 Hb_002284_010 0.0735953602 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000915_090 0.077857709 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
6 Hb_005941_040 0.0781335933 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
7 Hb_000240_090 0.0781396634 - - Rab5 [Hevea brasiliensis]
8 Hb_001199_050 0.0809196252 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
9 Hb_000347_410 0.082121433 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_000111_330 0.0835641474 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
11 Hb_129204_030 0.0852208285 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
12 Hb_000146_020 0.0863866656 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_000834_270 0.0873341418 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
14 Hb_005431_010 0.0875809074 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
15 Hb_000167_140 0.0892958431 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_003207_190 0.0909217018 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
17 Hb_000754_040 0.0912596802 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
18 Hb_000025_120 0.0924345965 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
19 Hb_004635_100 0.0927538542 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
20 Hb_153112_020 0.0929631972 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]

Gene co-expression network

sample Hb_002163_020 Hb_002163_020 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_029866_060 Hb_029866_060 Hb_002163_020--Hb_029866_060 Hb_002284_010 Hb_002284_010 Hb_002163_020--Hb_002284_010 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_005941_040 Hb_005941_040 Hb_002163_020--Hb_005941_040 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_153112_020 Hb_153112_020 Hb_011224_110--Hb_153112_020 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_000331_080 Hb_000331_080 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350 Hb_003656_070 Hb_003656_070 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_029866_060--Hb_002284_010 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_129204_030 Hb_129204_030 Hb_029866_060--Hb_129204_030 Hb_002284_010--Hb_005941_040 Hb_000635_180 Hb_000635_180 Hb_002284_010--Hb_000635_180 Hb_002301_140 Hb_002301_140 Hb_002284_010--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002284_010--Hb_028995_040 Hb_004635_100 Hb_004635_100 Hb_000915_090--Hb_004635_100 Hb_008725_260 Hb_008725_260 Hb_000915_090--Hb_008725_260 Hb_010422_060 Hb_010422_060 Hb_000915_090--Hb_010422_060 Hb_000915_090--Hb_000240_090 Hb_004109_170 Hb_004109_170 Hb_000915_090--Hb_004109_170 Hb_005941_040--Hb_000635_180 Hb_000445_180 Hb_000445_180 Hb_005941_040--Hb_000445_180 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_000240_090--Hb_004635_100 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.4225 53.0179 45.5746 37.4429 56.2783 56.015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.695 123.797 136.703 40.7034 27.9796

CAGE analysis