Hb_002163_030

Information

Type -
Description -
Location Contig2163: 49376-54428
Sequence    

Annotation

kegg
ID rcu:RCOM_1116380
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_012080628.1
description PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
swissprot
ID Q9LVE2
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2
trembl
ID A0A067K3K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13734 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 59 kda regulatory subunit b gamma isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22373: 49437-53743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_030 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
2 Hb_001252_010 0.0769532011 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
3 Hb_003609_030 0.0778244917 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_020000_020 0.0785714022 - - Troponin C, skeletal muscle, putative [Ricinus communis]
5 Hb_000283_070 0.0792871812 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
6 Hb_011030_010 0.0814753404 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
7 Hb_004888_020 0.0825631746 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
8 Hb_010931_080 0.0826010014 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
9 Hb_000107_500 0.0828852205 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
10 Hb_002054_040 0.0844646163 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
11 Hb_002942_160 0.0846228285 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
12 Hb_004370_030 0.0849849032 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
13 Hb_002255_030 0.0854741214 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
14 Hb_000457_260 0.086048179 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
15 Hb_000915_050 0.0861028689 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000002_040 0.0869866176 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_005532_050 0.0879934797 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_005993_020 0.088197767 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
19 Hb_000347_180 0.0886081556 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_006951_020 0.0888337757 - - Rop3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002163_030 Hb_002163_030 Hb_001252_010 Hb_001252_010 Hb_002163_030--Hb_001252_010 Hb_003609_030 Hb_003609_030 Hb_002163_030--Hb_003609_030 Hb_020000_020 Hb_020000_020 Hb_002163_030--Hb_020000_020 Hb_000283_070 Hb_000283_070 Hb_002163_030--Hb_000283_070 Hb_011030_010 Hb_011030_010 Hb_002163_030--Hb_011030_010 Hb_004888_020 Hb_004888_020 Hb_002163_030--Hb_004888_020 Hb_001252_010--Hb_003609_030 Hb_001595_030 Hb_001595_030 Hb_001252_010--Hb_001595_030 Hb_008803_090 Hb_008803_090 Hb_001252_010--Hb_008803_090 Hb_000125_170 Hb_000125_170 Hb_001252_010--Hb_000125_170 Hb_002027_260 Hb_002027_260 Hb_001252_010--Hb_002027_260 Hb_005532_050 Hb_005532_050 Hb_001252_010--Hb_005532_050 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_023386_040 Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_020000_020--Hb_003609_030 Hb_020000_020--Hb_000179_030 Hb_004370_030 Hb_004370_030 Hb_020000_020--Hb_004370_030 Hb_154745_010 Hb_154745_010 Hb_020000_020--Hb_154745_010 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_033187_050 Hb_033187_050 Hb_011030_010--Hb_033187_050 Hb_003531_060 Hb_003531_060 Hb_011030_010--Hb_003531_060 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_005321_020 Hb_005321_020 Hb_011030_010--Hb_005321_020 Hb_011030_010--Hb_000283_070 Hb_005993_020 Hb_005993_020 Hb_004888_020--Hb_005993_020 Hb_000062_250 Hb_000062_250 Hb_004888_020--Hb_000062_250 Hb_004888_020--Hb_000562_090 Hb_000134_090 Hb_000134_090 Hb_004888_020--Hb_000134_090 Hb_001680_010 Hb_001680_010 Hb_004888_020--Hb_001680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.0691 25.3767 9.07373 14.9826 19.7339 40.6297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4098 13.9348 19.2795 15.2589 11.5418

CAGE analysis