Hb_002163_070

Information

Type -
Description -
Location Contig2163: 142020-142271
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G006600g
description hypothetical protein
nr
ID KDP30785.1
description hypothetical protein JCGZ_13728 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_070 0.0 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
2 Hb_010252_010 0.0180693403 - - -
3 Hb_009083_020 0.0293248235 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
4 Hb_137862_020 0.0415492411 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
5 Hb_160950_010 0.0443066434 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
6 Hb_119583_030 0.0503653281 - - unnamed protein product [Vitis vinifera]
7 Hb_000248_080 0.0599854077 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_057721_010 0.0632232802 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_000025_800 0.0663679062 - - hypothetical protein VITISV_020143 [Vitis vinifera]
10 Hb_185437_010 0.0754940722 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
11 Hb_039440_010 0.0804982271 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023712_020 0.0860449019 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
13 Hb_136973_020 0.0881805432 - - -
14 Hb_001518_050 0.0911329791 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_000170_260 0.098441601 - - amino acid transporter, putative [Ricinus communis]
16 Hb_149194_010 0.1067896672 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
17 Hb_000483_120 0.1121278178 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
18 Hb_172983_010 0.1132614214 - - conserved hypothetical protein [Ricinus communis]
19 Hb_177179_020 0.1192173888 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006197_010 0.1194667386 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002163_070 Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_002163_070--Hb_010252_010 Hb_009083_020 Hb_009083_020 Hb_002163_070--Hb_009083_020 Hb_137862_020 Hb_137862_020 Hb_002163_070--Hb_137862_020 Hb_160950_010 Hb_160950_010 Hb_002163_070--Hb_160950_010 Hb_119583_030 Hb_119583_030 Hb_002163_070--Hb_119583_030 Hb_000248_080 Hb_000248_080 Hb_002163_070--Hb_000248_080 Hb_010252_010--Hb_009083_020 Hb_010252_010--Hb_160950_010 Hb_010252_010--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_010252_010--Hb_000025_800 Hb_185437_010 Hb_185437_010 Hb_010252_010--Hb_185437_010 Hb_009083_020--Hb_160950_010 Hb_009083_020--Hb_000248_080 Hb_009083_020--Hb_137862_020 Hb_039440_010 Hb_039440_010 Hb_009083_020--Hb_039440_010 Hb_137862_020--Hb_000248_080 Hb_023712_020 Hb_023712_020 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_137862_020--Hb_010252_010 Hb_160950_010--Hb_039440_010 Hb_160950_010--Hb_000248_080 Hb_160950_010--Hb_185437_010 Hb_119583_030--Hb_000025_800 Hb_119583_030--Hb_057721_010 Hb_119583_030--Hb_185437_010 Hb_000483_120 Hb_000483_120 Hb_119583_030--Hb_000483_120 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.24832 4.78655 5.87995 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis