Hb_002168_010

Information

Type -
Description -
Location Contig2168: 5744-9276
Sequence    

Annotation

kegg
ID vvi:100255872
description putative bifunctional dihydrofolate reductase-thymidylate synthase
nr
ID XP_010664721.1
description PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
swissprot
ID Q05762
description Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=1 SV=2
trembl
ID A0A0D2RL45
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G245400 PE=4 SV=1
Gene Ontology
ID GO:0003824
description bifunctional dihydrofolate reductase-thymidylate synthase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22386: 8334-9319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002168_010 0.0 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
2 Hb_000317_140 0.1268020175 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
3 Hb_007763_050 0.1336335395 - - hypothetical protein L484_012752 [Morus notabilis]
4 Hb_004669_030 0.1347733731 - - -
5 Hb_000641_020 0.1377895791 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
6 Hb_000015_070 0.1430218584 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
7 Hb_000635_070 0.1450173184 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
8 Hb_002562_110 0.1511602698 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
9 Hb_029142_070 0.1530703823 - - -
10 Hb_132180_010 0.1606883233 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
11 Hb_082006_010 0.1615274621 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004709_020 0.1616244483 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
13 Hb_025288_010 0.1652462027 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
14 Hb_000710_070 0.1680154244 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
15 Hb_016604_030 0.1712160075 - - histone H4 [Zea mays]
16 Hb_001220_010 0.1734540222 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
17 Hb_000671_120 0.1734895652 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
18 Hb_000994_110 0.1759707963 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011037_020 0.1779697995 - - unknown [Picea sitchensis]
20 Hb_009270_030 0.1802309993 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002168_010 Hb_002168_010 Hb_000317_140 Hb_000317_140 Hb_002168_010--Hb_000317_140 Hb_007763_050 Hb_007763_050 Hb_002168_010--Hb_007763_050 Hb_004669_030 Hb_004669_030 Hb_002168_010--Hb_004669_030 Hb_000641_020 Hb_000641_020 Hb_002168_010--Hb_000641_020 Hb_000015_070 Hb_000015_070 Hb_002168_010--Hb_000015_070 Hb_000635_070 Hb_000635_070 Hb_002168_010--Hb_000635_070 Hb_146675_010 Hb_146675_010 Hb_000317_140--Hb_146675_010 Hb_000317_140--Hb_000015_070 Hb_004709_020 Hb_004709_020 Hb_000317_140--Hb_004709_020 Hb_004466_060 Hb_004466_060 Hb_000317_140--Hb_004466_060 Hb_150023_010 Hb_150023_010 Hb_000317_140--Hb_150023_010 Hb_166480_010 Hb_166480_010 Hb_007763_050--Hb_166480_010 Hb_010368_030 Hb_010368_030 Hb_007763_050--Hb_010368_030 Hb_007763_050--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_007763_050--Hb_001396_250 Hb_175976_010 Hb_175976_010 Hb_007763_050--Hb_175976_010 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_004669_030--Hb_000635_070 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_000215_200 Hb_000215_200 Hb_000641_020--Hb_000215_200 Hb_003994_270 Hb_003994_270 Hb_000641_020--Hb_003994_270 Hb_041205_010 Hb_041205_010 Hb_000641_020--Hb_041205_010 Hb_000641_020--Hb_000635_070 Hb_029142_070 Hb_029142_070 Hb_000641_020--Hb_029142_070 Hb_000710_070 Hb_000710_070 Hb_000641_020--Hb_000710_070 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_082006_010 Hb_082006_010 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_000635_070--Hb_002562_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.851251 0.541884 1.37667 11.1342 1.11831 9.98034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33708 4.8006 0.835633 1.62286 2.13717

CAGE analysis