Hb_002168_020

Information

Type -
Description -
Location Contig2168: 9929-11424
Sequence    

Annotation

kegg
ID rcu:RCOM_1595260
description ATP binding protein, putative
nr
ID XP_002510426.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9R7Y3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1595260 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002168_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_029388_040 0.1577127678 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
3 Hb_012340_020 0.1709439518 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
4 Hb_010068_030 0.1735005351 - - aconitase, putative [Ricinus communis]
5 Hb_001534_070 0.1789489303 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
6 Hb_000059_040 0.1816339518 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
7 Hb_005228_100 0.1866746422 - - -
8 Hb_002374_440 0.192713825 - - conserved hypothetical protein [Ricinus communis]
9 Hb_089435_010 0.1932954543 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
10 Hb_001769_020 0.1948143688 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
11 Hb_000212_130 0.2004309482 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002843_100 0.2014271473 - - -
13 Hb_000413_170 0.2020826312 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
14 Hb_179511_010 0.2032154048 - - -
15 Hb_003581_110 0.2039942384 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
16 Hb_001633_100 0.2053371926 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
17 Hb_002609_010 0.2078466765 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
18 Hb_006501_060 0.208050138 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
19 Hb_002073_040 0.208381594 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029866_130 0.210428175 - - hypothetical protein JCGZ_00035 [Jatropha curcas]

Gene co-expression network

sample Hb_002168_020 Hb_002168_020 Hb_029388_040 Hb_029388_040 Hb_002168_020--Hb_029388_040 Hb_012340_020 Hb_012340_020 Hb_002168_020--Hb_012340_020 Hb_010068_030 Hb_010068_030 Hb_002168_020--Hb_010068_030 Hb_001534_070 Hb_001534_070 Hb_002168_020--Hb_001534_070 Hb_000059_040 Hb_000059_040 Hb_002168_020--Hb_000059_040 Hb_005228_100 Hb_005228_100 Hb_002168_020--Hb_005228_100 Hb_002374_440 Hb_002374_440 Hb_029388_040--Hb_002374_440 Hb_029388_040--Hb_005228_100 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_012340_020--Hb_001534_070 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_001534_070--Hb_010068_030 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_002505_040 Hb_002505_040 Hb_000059_040--Hb_002505_040 Hb_002073_040 Hb_002073_040 Hb_000059_040--Hb_002073_040 Hb_000009_590 Hb_000009_590 Hb_000059_040--Hb_000009_590 Hb_004586_190 Hb_004586_190 Hb_000059_040--Hb_004586_190 Hb_010315_050 Hb_010315_050 Hb_000059_040--Hb_010315_050 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_005228_100--Hb_002374_440 Hb_000771_160 Hb_000771_160 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_004374_050 Hb_004374_050 Hb_005228_100--Hb_004374_050 Hb_000739_290 Hb_000739_290 Hb_005228_100--Hb_000739_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55541 3.93621 0.60164 0.272236 8.23898 6.00536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.814578 2.18453 1.41408 0.198086 0

CAGE analysis