Hb_002168_070

Information

Type -
Description -
Location Contig2168: 59901-67890
Sequence    

Annotation

kegg
ID rcu:RCOM_1595240
description Jasmonate O-methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_002510424.1
description Jasmonate O-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9SBK6
description Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1
trembl
ID B9R7Y1
description Jasmonate O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1595240 PE=4 SV=1
Gene Ontology
ID GO:0005622
description jasmonate o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22389: 59907-67895 , PASA_asmbl_22390: 59888-67890
cDNA
(Sanger)
(ID:Location)		 011_O24.ab1: 59890-60598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002168_070 0.0 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
2 Hb_009771_040 0.059634713 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_002043_070 0.0596690843 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
4 Hb_000434_060 0.075571114 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_002053_190 0.0763642601 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
6 Hb_001405_170 0.0914745769 - - aspartyl protease family protein [Populus trichocarpa]
7 Hb_005211_210 0.0991068562 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
8 Hb_000045_080 0.1006753745 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002960_030 0.1039100595 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
10 Hb_000258_230 0.1039378367 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000622_030 0.1080448466 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
12 Hb_002890_330 0.1085126943 - - caspase, putative [Ricinus communis]
13 Hb_005051_010 0.1106368286 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
14 Hb_000270_750 0.1120097374 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
15 Hb_007103_020 0.1120207845 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
16 Hb_000983_130 0.1127556155 - - transcription factor, putative [Ricinus communis]
17 Hb_000201_010 0.1161201578 - - unnamed protein product [Vitis vinifera]
18 Hb_001541_210 0.1170875898 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
19 Hb_173107_020 0.1175756395 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
20 Hb_001950_100 0.117942574 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]

Gene co-expression network

sample Hb_002168_070 Hb_002168_070 Hb_009771_040 Hb_009771_040 Hb_002168_070--Hb_009771_040 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_000434_060 Hb_000434_060 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_002250_140 Hb_002250_140 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002043_070--Hb_002053_190 Hb_002043_070--Hb_005211_210 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_002043_070--Hb_000434_060 Hb_002043_070--Hb_009771_040 Hb_000434_060--Hb_005211_210 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_002053_190--Hb_002890_330 Hb_002053_190--Hb_001405_170 Hb_002960_030 Hb_002960_030 Hb_002053_190--Hb_002960_030 Hb_001541_210 Hb_001541_210 Hb_002053_190--Hb_001541_210 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001405_170--Hb_001541_210 Hb_001405_170--Hb_009771_040 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_008689_010 Hb_008689_010 Hb_005211_210--Hb_008689_010 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385909 45.2662 27.5876 95.3416 0.939217 0.44549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102757 0.0269459 0 6.50397 63.7582

CAGE analysis