Hb_002169_010

Information

Type -
Description -
Location Contig2169: 8234-21678
Sequence    

Annotation

kegg
ID rcu:RCOM_1269060
description lupus la ribonucleoprotein, putative
nr
ID XP_012081920.1
description PREDICTED: la-related protein 6B [Jatropha curcas]
swissprot
ID O80567
description La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2
trembl
ID A0A067K088
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19265 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22391: 8310-21850 , PASA_asmbl_22395: 11275-11396 , PASA_asmbl_22396: 9390-9962
cDNA
(Sanger)
(ID:Location)		 002_L04.ab1: 11639-21850 , 010_M03.ab1: 21099-21847 , 011_N09.ab1: 12536-21847 , 012_K14.ab1: 21096-21850 , 014_A15.ab1: 21352-21838 , 048_P24.ab1: 21140-21850 , 049_D14.ab1: 21170-21847 , 049_K22.ab1: 21175-21850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002169_010 0.0 - - PREDICTED: la-related protein 6B [Jatropha curcas]
2 Hb_029281_010 0.0497782249 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
3 Hb_011496_010 0.0525690548 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
4 Hb_160818_010 0.0700986137 - - -
5 Hb_000462_150 0.072732376 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
6 Hb_002377_050 0.075880305 - - Agmatine deiminase, putative [Ricinus communis]
7 Hb_002818_040 0.0783260536 - - tRNA synthetase-related family protein [Populus trichocarpa]
8 Hb_010866_040 0.0785245629 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
9 Hb_005314_010 0.0797585503 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_005147_110 0.0805490922 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
11 Hb_001623_550 0.0817558934 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
12 Hb_000176_140 0.0818610595 - - PREDICTED: bystin [Jatropha curcas]
13 Hb_018663_020 0.08230397 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
14 Hb_001439_180 0.0831056585 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
15 Hb_003384_030 0.0840205947 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
16 Hb_000608_120 0.0843665079 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
17 Hb_000490_030 0.0850281601 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
18 Hb_000001_180 0.085116788 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
19 Hb_127979_010 0.0852314899 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
20 Hb_002960_060 0.0871656768 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]

Gene co-expression network

sample Hb_002169_010 Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_011496_010 Hb_011496_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_011496_010--Hb_000462_150 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_001776_080 Hb_001776_080 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_160818_010--Hb_011496_010 Hb_160818_010--Hb_005314_010 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_000176_140 Hb_000176_140 Hb_002377_050--Hb_000176_140 Hb_002377_050--Hb_001776_080 Hb_002377_050--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_002377_050--Hb_001433_170 Hb_127979_010 Hb_127979_010 Hb_002377_050--Hb_127979_010 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
453.321 140.471 32.565 40.6266 391.192 460.625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
246.257 156.66 231.339 128.742 34.1254

CAGE analysis