Hb_002169_040

Information

Type -
Description -
Location Contig2169: 75029-76903
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00460g
description hypothetical protein
nr
ID ABK95427.1
description unknown [Populus trichocarpa]
swissprot
ID Q7XBW0
description Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. japonica GN=ITPK5 PE=2 SV=1
trembl
ID A9PGC4
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005829
description inositol -trisphosphate 5 6-kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22397: 74788-92118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002169_040 0.0 - - unknown [Populus trichocarpa]
2 Hb_000985_030 0.0525375437 - - PREDICTED: RRP15-like protein [Populus euphratica]
3 Hb_005269_070 0.0575496835 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
4 Hb_007676_080 0.0627141231 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
5 Hb_156279_020 0.0627495792 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
6 Hb_001489_080 0.067994216 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_000003_230 0.0692116252 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
8 Hb_000331_260 0.0692444004 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
9 Hb_001016_120 0.071115866 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
10 Hb_000081_160 0.0718360015 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
11 Hb_001971_010 0.0721816784 - - F23N19.4 [Arabidopsis thaliana]
12 Hb_031862_100 0.0724272381 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_015934_070 0.0733644167 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
14 Hb_000072_320 0.0757275484 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
15 Hb_004934_100 0.07643627 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000215_110 0.0766245435 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
17 Hb_001279_150 0.0781325934 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
18 Hb_000207_050 0.0782982393 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
19 Hb_003605_090 0.0786859574 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
20 Hb_000599_250 0.0789790995 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_002169_040 Hb_002169_040 Hb_000985_030 Hb_000985_030 Hb_002169_040--Hb_000985_030 Hb_005269_070 Hb_005269_070 Hb_002169_040--Hb_005269_070 Hb_007676_080 Hb_007676_080 Hb_002169_040--Hb_007676_080 Hb_156279_020 Hb_156279_020 Hb_002169_040--Hb_156279_020 Hb_001489_080 Hb_001489_080 Hb_002169_040--Hb_001489_080 Hb_000003_230 Hb_000003_230 Hb_002169_040--Hb_000003_230 Hb_000985_030--Hb_001489_080 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_007676_080--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_007676_080--Hb_003304_020 Hb_000390_300 Hb_000390_300 Hb_007676_080--Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_007676_080--Hb_008494_100 Hb_006573_190 Hb_006573_190 Hb_007676_080--Hb_006573_190 Hb_156279_020--Hb_000331_260 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_001489_080--Hb_004934_100 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_001489_080--Hb_000003_230 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26951 2.92667 5.44554 6.31562 5.60674 6.67111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87131 9.81691 8.25495 7.64632 6.49773

CAGE analysis