Hb_002170_030

Information

Type -
Description -
Location Contig2170: 102770-105741
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11950g
description POPTRDRAFT_825321; hypothetical protein
nr
ID XP_012087905.1
description PREDICTED: laccase-4-like [Jatropha curcas]
swissprot
ID O80434
description Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2
trembl
ID B9IG56
description Laccase OS=Populus trichocarpa GN=POPTR_0016s11950g PE=3 SV=2
Gene Ontology
ID GO:0048046
description laccase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22406: 102939-105739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_030 0.0 - - PREDICTED: laccase-4-like [Jatropha curcas]
2 Hb_023342_010 0.0380803467 - - -
3 Hb_009158_040 0.0446624301 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
4 Hb_006351_090 0.0447052143 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
5 Hb_001053_120 0.048076533 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_008705_080 0.0494547512 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
7 Hb_026198_080 0.0581541364 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
8 Hb_000023_100 0.0679905283 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
9 Hb_003906_080 0.0686479178 - - Peroxidase 66 precursor, putative [Ricinus communis]
10 Hb_001163_010 0.0691293319 - - PREDICTED: syncoilin [Jatropha curcas]
11 Hb_000029_210 0.0704163639 - - protein binding protein, putative [Ricinus communis]
12 Hb_008518_060 0.0758593325 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
13 Hb_000580_200 0.080798222 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
14 Hb_000805_060 0.0825512809 - - laccase, putative [Ricinus communis]
15 Hb_001123_300 0.0834143603 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
16 Hb_135887_010 0.0848229944 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_001097_030 0.0862224822 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_001105_150 0.0877230708 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
19 Hb_000427_020 0.0900491083 - - PsbA, partial [Dianthus pygmaeus]
20 Hb_008695_060 0.093148407 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_002170_030 Hb_002170_030 Hb_023342_010 Hb_023342_010 Hb_002170_030--Hb_023342_010 Hb_009158_040 Hb_009158_040 Hb_002170_030--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_002170_030--Hb_006351_090 Hb_001053_120 Hb_001053_120 Hb_002170_030--Hb_001053_120 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_026198_080 Hb_026198_080 Hb_002170_030--Hb_026198_080 Hb_000023_100 Hb_000023_100 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_009158_040 Hb_023342_010--Hb_001053_120 Hb_023342_010--Hb_026198_080 Hb_000029_210 Hb_000029_210 Hb_023342_010--Hb_000029_210 Hb_009158_040--Hb_001053_120 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_003906_080 Hb_003906_080 Hb_006351_090--Hb_003906_080 Hb_006351_090--Hb_008705_080 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_000029_210 Hb_001053_120--Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_008705_080--Hb_001053_120 Hb_008705_080--Hb_009158_040 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0482162 3.99634 18.7808 152.158 0.113989 0.0277395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.322307 230.496

CAGE analysis