Hb_002171_060

Information

Type -
Description -
Location Contig2171: 139253-148459
Sequence    

Annotation

kegg
ID rcu:RCOM_0357370
description hypothetical protein
nr
ID XP_002534097.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T778
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0357370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22428: 139285-147961 , PASA_asmbl_22429: 139295-148413 , PASA_asmbl_22430: 139351-140333 , PASA_asmbl_22431: 141711-142052 , PASA_asmbl_22432: 140985-141216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002171_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_161574_020 0.0616499738 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
3 Hb_000261_160 0.0630095144 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
4 Hb_007878_010 0.0638892688 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
5 Hb_001931_010 0.0676317871 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
6 Hb_000390_300 0.0744684824 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
7 Hb_000005_090 0.077187852 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
8 Hb_000599_260 0.0793045047 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
9 Hb_017895_040 0.0802458861 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
10 Hb_002105_100 0.0808941616 - - protein with unknown function [Ricinus communis]
11 Hb_154948_040 0.0811296806 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
12 Hb_002078_140 0.0822222676 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
13 Hb_000270_310 0.0823570478 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
14 Hb_003992_270 0.082726571 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
15 Hb_001341_150 0.082934468 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
16 Hb_000465_390 0.0830418947 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
17 Hb_000946_090 0.0839611633 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
18 Hb_001016_150 0.0841955862 - - Rop1 [Hevea brasiliensis]
19 Hb_006693_020 0.0844547444 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
20 Hb_000359_150 0.0857477542 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002171_060 Hb_002171_060 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_001931_010 Hb_001931_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_161574_020--Hb_007878_010 Hb_000270_310 Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100 Hb_008071_020 Hb_008071_020 Hb_000261_160--Hb_008071_020 Hb_001195_480 Hb_001195_480 Hb_000261_160--Hb_001195_480 Hb_003992_270 Hb_003992_270 Hb_000261_160--Hb_003992_270 Hb_000261_160--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_000261_160--Hb_001279_080 Hb_007878_010--Hb_002641_060 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_007878_010--Hb_000270_310 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16678 6.2737 12.192 15.2531 8.20576 9.82139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1999 23.7407 7.69912 8.37501 8.46944

CAGE analysis