Hb_002172_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2172: 34203-44578
Sequence    

Annotation

kegg
ID rcu:RCOM_1554420
description hypothetical protein
nr
ID XP_012078439.1
description PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13128 PE=4 SV=1
Gene Ontology
ID GO:0007275
description dentin sialophosphoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22433: 35505-44386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002172_030 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
2 Hb_012654_020 0.0501225471 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001846_080 0.0821666858 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
4 Hb_005410_010 0.0838371375 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
5 Hb_000050_120 0.0850078938 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
6 Hb_011609_190 0.0864480926 - - 14-3-3 protein 2 [Hevea brasiliensis]
7 Hb_154381_050 0.0873400521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002078_040 0.0881473246 - - protein with unknown function [Ricinus communis]
9 Hb_043959_010 0.0939015324 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
10 Hb_000300_540 0.094242821 - - PREDICTED: syntaxin-132 [Jatropha curcas]
11 Hb_000483_370 0.0948438113 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000088_180 0.1012910335 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
13 Hb_006029_010 0.1023473596 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
14 Hb_001628_110 0.1026097977 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
15 Hb_007111_040 0.1051328386 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
16 Hb_000491_080 0.105550365 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
17 Hb_001776_080 0.1085589597 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
18 Hb_006478_070 0.1085740594 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
19 Hb_011021_030 0.1089223251 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
20 Hb_000320_440 0.1116000315 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002172_030 Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_012654_020--Hb_005410_010 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_012654_020--Hb_000050_120 Hb_000172_530 Hb_000172_530 Hb_001846_080--Hb_000172_530 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_006478_070 Hb_006478_070 Hb_001846_080--Hb_006478_070 Hb_001846_080--Hb_012654_020 Hb_000320_440 Hb_000320_440 Hb_001846_080--Hb_000320_440 Hb_005410_010--Hb_154381_050 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_000050_120--Hb_002078_040 Hb_003304_080 Hb_003304_080 Hb_000050_120--Hb_003304_080 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_007810_040 Hb_007810_040 Hb_000050_120--Hb_007810_040 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_000179_250 Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
242.774 22.0348 17.2458 10.0322 310.282 248.348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.7892 81.7078 102.279 21.1878 10.3386

CAGE analysis