Hb_002173_080

Information

Type -
Description -
Location Contig2173: 122628-124205
Sequence    

Annotation

kegg
ID rcu:RCOM_1153860
description alcohol dehydrogenase, putative (EC:1.1.1.195)
nr
ID XP_002524928.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q40976
description Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1
trembl
ID B9SG09
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1153860 PE=3 SV=1
Gene Ontology
ID GO:0008270
description cinnamyl alcohol dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002173_080 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_039562_010 0.0828096733 - - PREDICTED: protein SRG1-like [Jatropha curcas]
3 Hb_003189_030 0.0908921267 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
4 Hb_000487_150 0.0954475522 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
5 Hb_003237_040 0.0980758471 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_000318_440 0.0985554496 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
7 Hb_004097_080 0.1022460487 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
8 Hb_135392_010 0.1040444689 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_000466_090 0.1055677818 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
10 Hb_007491_010 0.1150195044 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_073171_020 0.1170791128 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
12 Hb_007417_020 0.117446365 - - Reticuline oxidase precursor, putative [Ricinus communis]
13 Hb_006620_040 0.1213744806 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
14 Hb_000712_060 0.1230326803 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
15 Hb_001003_020 0.1230623266 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
16 Hb_004693_010 0.1248947505 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
17 Hb_000127_250 0.1257353918 - - Alliin lyase precursor, putative [Ricinus communis]
18 Hb_000221_200 0.1276940766 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
19 Hb_023732_020 0.1311181615 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
20 Hb_003090_070 0.1311581941 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_002173_080 Hb_002173_080 Hb_039562_010 Hb_039562_010 Hb_002173_080--Hb_039562_010 Hb_003189_030 Hb_003189_030 Hb_002173_080--Hb_003189_030 Hb_000487_150 Hb_000487_150 Hb_002173_080--Hb_000487_150 Hb_003237_040 Hb_003237_040 Hb_002173_080--Hb_003237_040 Hb_000318_440 Hb_000318_440 Hb_002173_080--Hb_000318_440 Hb_004097_080 Hb_004097_080 Hb_002173_080--Hb_004097_080 Hb_039562_010--Hb_000318_440 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_004693_010 Hb_004693_010 Hb_039562_010--Hb_004693_010 Hb_135392_010 Hb_135392_010 Hb_039562_010--Hb_135392_010 Hb_039562_010--Hb_004097_080 Hb_035726_020 Hb_035726_020 Hb_003189_030--Hb_035726_020 Hb_001003_020 Hb_001003_020 Hb_003189_030--Hb_001003_020 Hb_000466_090 Hb_000466_090 Hb_003189_030--Hb_000466_090 Hb_006620_040 Hb_006620_040 Hb_003189_030--Hb_006620_040 Hb_000659_010 Hb_000659_010 Hb_003189_030--Hb_000659_010 Hb_000487_150--Hb_000318_440 Hb_012532_020 Hb_012532_020 Hb_000487_150--Hb_012532_020 Hb_000127_250 Hb_000127_250 Hb_000487_150--Hb_000127_250 Hb_000059_100 Hb_000059_100 Hb_000487_150--Hb_000059_100 Hb_000487_150--Hb_039562_010 Hb_007491_010 Hb_007491_010 Hb_003237_040--Hb_007491_010 Hb_003237_040--Hb_000127_250 Hb_058620_040 Hb_058620_040 Hb_003237_040--Hb_058620_040 Hb_003237_040--Hb_135392_010 Hb_007417_020 Hb_007417_020 Hb_003237_040--Hb_007417_020 Hb_058620_050 Hb_058620_050 Hb_003237_040--Hb_058620_050 Hb_000318_440--Hb_004693_010 Hb_000318_440--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_000318_440--Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_000318_440--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000318_440--Hb_003090_070 Hb_058620_010 Hb_058620_010 Hb_004097_080--Hb_058620_010 Hb_004097_080--Hb_135392_010 Hb_000712_070 Hb_000712_070 Hb_004097_080--Hb_000712_070 Hb_003334_080 Hb_003334_080 Hb_004097_080--Hb_003334_080 Hb_001134_040 Hb_001134_040 Hb_004097_080--Hb_001134_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0212643 0.0177113 0.0654799 0.0878231 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.16911 0.156998

CAGE analysis