Hb_002175_040

Information

Type -
Description -
Location Contig2175: 42183-44423
Sequence    

Annotation

kegg
ID rcu:RCOM_0820570
description transcription factor, putative
nr
ID XP_012082211.1
description PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16414 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb family transcription factor apl-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002175_040 0.0 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
2 Hb_000705_300 0.270875372 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
3 Hb_001366_080 0.28607865 transcription factor TF Family: NAC NAC transcription factor 068 [Jatropha curcas]
4 Hb_011689_130 0.2943296136 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
5 Hb_010913_010 0.2948460046 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_148891_010 0.2954980092 - - -
7 Hb_000445_330 0.2984756024 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000934_200 0.3052862853 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
9 Hb_173902_040 0.3053257285 - - -
10 Hb_000788_130 0.3078750579 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
11 Hb_000959_310 0.3114324367 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
12 Hb_188209_010 0.3122905851 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
13 Hb_004204_090 0.3170204308 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
14 Hb_068922_010 0.3200740059 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
15 Hb_000275_180 0.320153349 - - -
16 Hb_000538_150 0.3204317262 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
17 Hb_000627_100 0.3211361342 - - -
18 Hb_000046_490 0.3251397648 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_000713_020 0.3261727902 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002685_180 0.329184543 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002175_040 Hb_002175_040 Hb_000705_300 Hb_000705_300 Hb_002175_040--Hb_000705_300 Hb_001366_080 Hb_001366_080 Hb_002175_040--Hb_001366_080 Hb_011689_130 Hb_011689_130 Hb_002175_040--Hb_011689_130 Hb_010913_010 Hb_010913_010 Hb_002175_040--Hb_010913_010 Hb_148891_010 Hb_148891_010 Hb_002175_040--Hb_148891_010 Hb_000445_330 Hb_000445_330 Hb_002175_040--Hb_000445_330 Hb_000331_290 Hb_000331_290 Hb_000705_300--Hb_000331_290 Hb_006501_110 Hb_006501_110 Hb_000705_300--Hb_006501_110 Hb_000390_200 Hb_000390_200 Hb_000705_300--Hb_000390_200 Hb_006096_040 Hb_006096_040 Hb_000705_300--Hb_006096_040 Hb_003371_180 Hb_003371_180 Hb_000705_300--Hb_003371_180 Hb_000139_330 Hb_000139_330 Hb_000705_300--Hb_000139_330 Hb_001047_150 Hb_001047_150 Hb_001366_080--Hb_001047_150 Hb_168978_020 Hb_168978_020 Hb_001366_080--Hb_168978_020 Hb_001865_080 Hb_001865_080 Hb_001366_080--Hb_001865_080 Hb_000086_060 Hb_000086_060 Hb_001366_080--Hb_000086_060 Hb_001366_080--Hb_148891_010 Hb_009493_010 Hb_009493_010 Hb_001366_080--Hb_009493_010 Hb_011689_130--Hb_010913_010 Hb_011689_130--Hb_148891_010 Hb_003322_010 Hb_003322_010 Hb_011689_130--Hb_003322_010 Hb_003776_040 Hb_003776_040 Hb_011689_130--Hb_003776_040 Hb_004102_030 Hb_004102_030 Hb_011689_130--Hb_004102_030 Hb_155541_010 Hb_155541_010 Hb_010913_010--Hb_155541_010 Hb_006907_100 Hb_006907_100 Hb_010913_010--Hb_006907_100 Hb_000099_230 Hb_000099_230 Hb_010913_010--Hb_000099_230 Hb_011485_090 Hb_011485_090 Hb_010913_010--Hb_011485_090 Hb_004846_100 Hb_004846_100 Hb_010913_010--Hb_004846_100 Hb_118228_010 Hb_118228_010 Hb_010913_010--Hb_118228_010 Hb_000445_190 Hb_000445_190 Hb_148891_010--Hb_000445_190 Hb_148891_010--Hb_004102_030 Hb_001017_080 Hb_001017_080 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_000803_040 Hb_000803_040 Hb_148891_010--Hb_000803_040 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060 Hb_042404_010 Hb_042404_010 Hb_000445_330--Hb_042404_010 Hb_000086_330 Hb_000086_330 Hb_000445_330--Hb_000086_330 Hb_019033_010 Hb_019033_010 Hb_000445_330--Hb_019033_010 Hb_010128_110 Hb_010128_110 Hb_000445_330--Hb_010128_110 Hb_004502_080 Hb_004502_080 Hb_000445_330--Hb_004502_080 Hb_068804_150 Hb_068804_150 Hb_000445_330--Hb_068804_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106918 0.0996926 0.129832 0.028602 0.0966956 0.0290602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.378205 0.0594691 0 0 0

CAGE analysis