Hb_002180_010

Information

Type -
Description -
Location Contig2180: 48995-54293
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0043231
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002180_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_117240_010 0.1943742793 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
3 Hb_000829_080 0.2607269555 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_010288_040 0.262535797 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
5 Hb_006922_060 0.2783886405 - - calcineurin B, putative [Ricinus communis]
6 Hb_003398_030 0.2878913815 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
7 Hb_008289_050 0.294901118 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
8 Hb_062006_010 0.2949478011 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_021888_090 0.3012144648 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
10 Hb_000077_240 0.3036696792 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
11 Hb_082730_010 0.3042691011 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
12 Hb_007451_060 0.3058237504 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
13 Hb_005779_050 0.3098009053 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
14 Hb_004195_180 0.3111135747 - - unnamed protein product [Coffea canephora]
15 Hb_004732_010 0.3131534649 - - -
16 Hb_170207_010 0.3153815939 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
17 Hb_006907_120 0.3318954646 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
18 Hb_001720_060 0.3320367656 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
19 Hb_027472_230 0.3358476896 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
20 Hb_011457_020 0.3361883304 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]

Gene co-expression network

sample Hb_002180_010 Hb_002180_010 Hb_117240_010 Hb_117240_010 Hb_002180_010--Hb_117240_010 Hb_000829_080 Hb_000829_080 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_117240_010--Hb_000829_080 Hb_021888_090 Hb_021888_090 Hb_117240_010--Hb_021888_090 Hb_004788_040 Hb_004788_040 Hb_117240_010--Hb_004788_040 Hb_009012_010 Hb_009012_010 Hb_117240_010--Hb_009012_010 Hb_003100_010 Hb_003100_010 Hb_117240_010--Hb_003100_010 Hb_004732_010 Hb_004732_010 Hb_000829_080--Hb_004732_010 Hb_007451_060 Hb_007451_060 Hb_000829_080--Hb_007451_060 Hb_000829_080--Hb_010288_040 Hb_000829_080--Hb_004788_040 Hb_010288_040--Hb_004732_010 Hb_005779_050 Hb_005779_050 Hb_010288_040--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010288_040--Hb_007105_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060 Hb_006907_120 Hb_006907_120 Hb_010288_040--Hb_006907_120 Hb_002798_010 Hb_002798_010 Hb_006922_060--Hb_002798_010 Hb_005333_150 Hb_005333_150 Hb_006922_060--Hb_005333_150 Hb_009780_080 Hb_009780_080 Hb_006922_060--Hb_009780_080 Hb_079268_010 Hb_079268_010 Hb_006922_060--Hb_079268_010 Hb_003226_160 Hb_003226_160 Hb_006922_060--Hb_003226_160 Hb_000077_240 Hb_000077_240 Hb_003398_030--Hb_000077_240 Hb_111347_010 Hb_111347_010 Hb_003398_030--Hb_111347_010 Hb_003398_030--Hb_006907_120 Hb_003398_030--Hb_008289_050 Hb_128051_010 Hb_128051_010 Hb_003398_030--Hb_128051_010 Hb_003398_030--Hb_007105_010 Hb_027472_230 Hb_027472_230 Hb_008289_050--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_008289_050--Hb_004195_180 Hb_001720_060 Hb_001720_060 Hb_008289_050--Hb_001720_060 Hb_001085_100 Hb_001085_100 Hb_008289_050--Hb_001085_100 Hb_008289_050--Hb_000077_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00653402 0.0129226 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.014818 0.0116606 0 0.0138763 0

CAGE analysis