Hb_002182_020

Information

Type -
Description -
Location Contig2182: 15764-18350
Sequence    

Annotation

kegg
ID rcu:RCOM_0735340
description Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative
nr
ID XP_002526251.1
description Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P81760
description Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2
trembl
ID B9SJT2
description Thylakoid lumenal 17.4 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0735340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22491: 14655-18427
cDNA
(Sanger)
(ID:Location)		 016_K07.ab1: 14834-18365 , 019_E20.ab1: 14866-18362

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_020 0.0 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_000096_190 0.1023619787 - - unknown [Lotus japonicus]
3 Hb_002759_120 0.1274313945 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000749_020 0.1281031852 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000049_160 0.1357084991 - - tyrosine decarboxylase family protein [Populus trichocarpa]
6 Hb_000086_210 0.1378343059 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_005563_010 0.1423170573 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
8 Hb_000291_290 0.1433112823 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003935_070 0.1435807376 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_000649_040 0.1453981747 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
11 Hb_000049_180 0.1466791427 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
12 Hb_005496_020 0.1504709897 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
13 Hb_001096_130 0.1528042259 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas]
14 Hb_143004_020 0.1539609852 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
15 Hb_000962_070 0.1548874117 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_001842_020 0.1551197172 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
17 Hb_042083_040 0.1569047815 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000808_150 0.1602640246 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
19 Hb_000139_300 0.1606662268 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
20 Hb_001369_100 0.1617559725 - - hypothetical protein JCGZ_26280 [Jatropha curcas]

Gene co-expression network

sample Hb_002182_020 Hb_002182_020 Hb_000096_190 Hb_000096_190 Hb_002182_020--Hb_000096_190 Hb_002759_120 Hb_002759_120 Hb_002182_020--Hb_002759_120 Hb_000749_020 Hb_000749_020 Hb_002182_020--Hb_000749_020 Hb_000049_160 Hb_000049_160 Hb_002182_020--Hb_000049_160 Hb_000086_210 Hb_000086_210 Hb_002182_020--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_002182_020--Hb_005563_010 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_000096_190--Hb_002759_120 Hb_042083_040 Hb_042083_040 Hb_000096_190--Hb_042083_040 Hb_000096_190--Hb_000049_160 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000749_020--Hb_000086_210 Hb_000808_150 Hb_000808_150 Hb_000749_020--Hb_000808_150 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_000049_160--Hb_000049_180 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_000139_300 Hb_000139_300 Hb_000086_210--Hb_000139_300 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_000086_210--Hb_005074_040 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_001976_030 Hb_001976_030 Hb_005563_010--Hb_001976_030 Hb_005563_010--Hb_000049_180 Hb_001369_100 Hb_001369_100 Hb_005563_010--Hb_001369_100 Hb_005563_010--Hb_000139_300 Hb_001628_120 Hb_001628_120 Hb_005563_010--Hb_001628_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7039 4.85188 55.6848 78.341 4.77238 12.6031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5274 18.4036 6.41934 9.26369 70.8847

CAGE analysis